Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 1.4e-34 149.1 77 100.0
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 1.3e-32 142.5 77 96.1
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 8.7e-32 139.8 77 93.5
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 7.4e-31 136.7 77 90.9
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 6.2e-30 133.7 77 88.3
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 1.4e-29 132.5 77 88.3
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 1.4e-29 132.5 77 88.3
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 2.6e-28 128.3 77 88.3
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 2.6e-28 128.3 77 88.3
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 7.6e-28 126.7 77 85.7
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 2.5e-26 121.7 77 79.2
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 1.0e-24 116.3 77 75.3
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 2.4e-21 105.1 66 77.3
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 2.3e-16 88.6 69 60.9
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 1.5e-15 85.9 79 55.7
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 1.9e-15 85.5 68 60.3
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 5.7e-15 84.0 73 56.2
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 9.7e-15 83.2 69 62.3
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 1.3e-14 82.8 71 57.7
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 1.3e-14 82.8 71 57.7
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 1.3e-14 82.8 68 60.3
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 2.2e-14 82.0 66 65.2
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 2.2e-14 82.0 69 62.3
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 2.8e-14 81.6 69 62.3
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 4.8e-14 80.9 64 64.1
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 8.2e-14 80.1 66 62.1
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 8.2e-14 80.1 73 57.5
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 1.1e-13 79.7 76 50.0
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 1.1e-13 79.7 66 63.6
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.1e-13 79.7 66 63.6
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 1.1e-13 79.7 68 60.3
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 1.8e-13 79.0 67 58.2
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 1.8e-13 79.0 75 58.7
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 1.8e-13 79.0 75 54.7
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 1.8e-13 79.0 67 58.2
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.4e-13 78.6 66 59.1
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.4e-13 78.6 67 58.2
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 2.4e-13 78.6 61 63.9
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 2.4e-13 78.6 61 65.6
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 4.1e-13 77.8 76 59.2
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 4.1e-13 77.8 66 62.1
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 4.1e-13 77.8 61 65.6
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 5.3e-13 77.4 61 62.3
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 5.3e-13 77.4 67 58.2
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 5.3e-13 77.4 67 55.2
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 6.9e-13 77.0 61 65.6
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 6.9e-13 77.0 64 60.9
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 6.9e-13 77.0 66 53.0
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.2e-12 76.3 63 58.7
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 1.2e-12 76.3 75 54.7
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 2.0e-12 75.5 73 54.8
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 3.4e-12 74.7 61 59.0
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 4.5e-12 74.3 59 61.0
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 5.9e-12 73.9 55 61.8
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 5.9e-12 73.9 61 59.0
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 5.9e-12 73.9 64 57.8
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 5.9e-12 73.9 66 57.6
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 7.7e-12 73.6 77 53.2
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 7.7e-12 73.6 64 59.4
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 7.7e-12 73.6 58 62.1
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 1.0e-11 73.2 73 52.1
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 1.0e-11 73.2 67 55.2
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 1.0e-11 73.2 67 55.2
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 1.0e-11 73.2 59 62.7
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 1.7e-11 72.4 60 65.0
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 1.7e-11 72.4 59 59.3
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 1.7e-11 72.4 67 53.7
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 2.2e-11 72.0 61 55.7
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 2.2e-11 72.0 72 52.8
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 6.5e-11 70.5 63 58.7
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 8.5e-11 70.1 79 45.6
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 1.1e-10 69.7 59 59.3
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 1.1e-10 69.7 72 54.2
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 1.1e-10 69.7 59 57.6
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 2.5e-10 68.6 67 50.7
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 3.2e-10 68.2 66 54.5
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 9.4e-10 66.6 62 56.5
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 9.4e-10 66.6 54 51.9
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 9.4e-10 66.6 59 55.9
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 1.6e-09 65.9 49 59.2
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.6e-09 65.9 64 54.7
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 1.0e-08 63.2 57 54.4
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 5.1e-08 60.8 49 55.1
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 1.1e-07 59.7 61 47.5
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 2.0e-07 58.9 63 47.6
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 3.3e-07 58.2 49 53.1
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 5.7e-07 57.4 50 50.0
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 9.7e-07 56.6 78 42.3
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 9.7e-07 56.6 69 42.0
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 9.7e-07 56.6 69 42.0
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 9.7e-07 56.6 47 57.4
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 1.3e-06 56.2 52 46.2
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 1.3e-06 56.2 45 57.8
Mapoly0162s0010 Marchantia polymorpha HOM05D007448 ORTHO05D009392 1.7e-06 55.8 62 50.0
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 2.2e-06 55.5 54 48.1


User provided reference genes

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