Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.3e-122 443.4 265 100.0
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 9.4e-110 400.6 263 90.1
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.2e-94 348.6 225 95.1
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 2.1e-93 346.3 276 75.7
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 2.1e-93 346.3 276 75.7
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.8e-92 343.2 263 79.5
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.0e-92 342.4 263 79.1
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 1.4e-89 333.6 296 71.6
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.6e-85 320.1 224 84.8
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.5e-80 302.4 265 65.7
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.7e-79 300.1 262 67.6
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.9e-79 298.9 262 66.4
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 8.6e-79 297.7 260 66.2
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 4.3e-78 295.4 260 66.2
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 4.3e-78 295.4 260 66.2
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 4.3e-78 295.4 262 66.8
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 8.0e-77 291.2 262 64.9
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 2.0e-75 286.6 260 64.2
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 2.6e-75 286.2 262 64.1
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.7e-74 283.5 264 65.2
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.7e-74 283.5 264 65.2
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 8.3e-74 281.2 267 64.4
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.1e-73 280.8 260 64.6
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 5.4e-73 278.5 262 64.1
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 7.0e-73 278.1 267 64.0
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 4.6e-72 275.4 264 63.6
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 8.3e-66 254.6 148 89.2
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.4e-65 253.8 222 64.4
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 7.1e-65 251.5 225 61.8
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 4.6e-64 248.8 262 56.5
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 8.6e-63 244.6 266 58.3
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 2.5e-62 243.0 264 55.7
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.4e-60 237.3 263 55.1
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 2.4e-60 236.5 265 56.2
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 4.0e-60 235.7 261 54.0
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 4.0e-60 235.7 260 55.8
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 4.0e-60 235.7 262 55.7
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 5.2e-60 235.3 262 53.4
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 5.2e-60 235.3 162 77.8
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 6.8e-60 235.0 262 55.3
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 6.8e-60 235.0 263 55.1
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 6.8e-60 235.0 262 56.1
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 8.9e-60 234.6 259 54.8
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 1.2e-59 234.2 260 53.5
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.2e-59 234.2 262 54.6
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.5e-59 233.8 263 55.1
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 2.0e-59 233.4 262 56.1
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 2.6e-59 233.0 262 55.0
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 4.4e-59 232.3 218 61.9
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 7.6e-59 231.5 266 53.4
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 7.6e-59 231.5 162 76.5
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 7.6e-59 231.5 257 54.1
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 9.9e-59 231.1 162 74.7
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.7e-58 230.3 262 53.8
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 2.2e-58 229.9 260 55.8
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 2.9e-58 229.6 265 55.1
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 2.9e-58 229.6 251 55.8
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 4.9e-58 228.8 260 54.2
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 4.9e-58 228.8 259 56.0
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 8.4e-58 228.0 222 60.8
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 1.1e-57 227.6 262 53.8
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 1.1e-57 227.6 266 55.3
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.9e-57 226.9 218 59.2
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 2.4e-57 226.5 260 54.6
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 2.4e-57 226.5 260 52.3
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 3.2e-57 226.1 160 71.9
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 4.2e-57 225.7 262 51.5
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 5.4e-57 225.3 160 76.2
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 5.4e-57 225.3 217 60.8
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 7.1e-57 224.9 265 52.8
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.6e-56 223.8 171 70.8
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 2.7e-56 223.0 262 54.2
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 3.5e-56 222.6 171 70.2
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 4.6e-56 222.2 259 54.8
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 2.3e-55 219.9 227 59.5
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 2.3e-55 219.9 216 57.9
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 5.1e-55 218.8 261 53.6
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 8.7e-55 218.0 162 71.0
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.1e-54 217.6 264 52.7
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.1e-54 217.6 264 52.7
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.5e-54 217.2 162 68.5
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 3.3e-54 216.1 261 54.0
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 3.3e-54 216.1 264 52.7
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.3e-54 216.1 264 52.7
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.3e-54 216.1 264 52.7
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 3.3e-54 216.1 221 58.8
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 5.6e-54 215.3 162 68.5
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.3e-53 214.2 266 50.8
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 2.1e-53 213.4 172 67.4
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 3.6e-53 212.6 267 54.3
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 4.8e-53 212.2 264 51.5
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 8.1e-53 211.5 172 65.7
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 8.1e-53 211.5 271 49.8
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.1e-52 211.1 172 65.7
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.1e-52 211.1 166 68.7
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.1e-52 211.1 266 50.0
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.4e-52 210.7 264 51.5
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.4e-52 209.9 208 58.7
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 9.0e-52 208.0 205 59.5
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.2e-51 207.6 166 67.5
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 1.5e-51 207.2 172 64.5
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 2.6e-51 206.5 243 51.9
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 5.8e-51 205.3 209 56.5
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 5.8e-51 205.3 166 67.5
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 5.8e-51 205.3 162 66.7
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.1e-49 201.1 161 67.7
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 1.9e-49 200.3 162 65.4
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 4.2e-49 199.1 162 65.4
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 4.2e-49 199.1 162 64.8
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 7.1e-49 198.4 156 66.7
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.1e-49 198.4 193 61.7
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 3.5e-48 196.1 138 76.1
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.0e-47 194.5 260 48.1
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 2.3e-47 193.4 230 53.5
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 8.7e-47 191.4 174 64.9
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.5e-46 189.9 139 70.5
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 2.5e-46 189.9 153 65.4
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 4.3e-46 189.1 116 86.2
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 9.6e-46 188.0 162 64.8
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.3e-45 187.6 174 63.8
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.3e-45 187.6 174 63.8
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 2.1e-45 186.8 165 64.2
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 6.2e-45 185.3 174 57.5
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 6.2e-45 185.3 153 63.4
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.1e-44 184.5 173 57.8
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.2e-43 181.0 257 44.0
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.2e-43 181.0 256 44.1
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 2.6e-43 179.9 172 57.6
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.1e-41 174.5 257 45.5
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 6.7e-39 165.2 171 58.5
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 1.1e-38 164.5 253 43.1
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.5e-38 164.1 169 58.0
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 4.8e-37 159.1 139 64.7
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 6.2e-37 158.7 173 52.6
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 1.1e-36 157.9 150 54.0
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 1.2e-35 154.5 153 56.9
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 1.1e-33 147.9 164 52.4
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.9e-33 147.1 265 41.5
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 9.3e-33 144.8 130 60.8
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.6e-32 144.1 158 53.8
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 4.3e-30 136.0 108 67.6
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 5.7e-30 135.6 164 51.8
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 6.9e-28 128.6 95 72.6
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.7e-26 124.0 147 49.0
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 5.0e-26 122.5 152 50.0
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.9e-25 120.6 130 52.3
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.6e-24 117.5 154 48.1
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 8.7e-23 111.7 93 58.1
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.4e-20 103.6 154 42.2
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 2.2e-13 80.5 73 57.5
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.4e-11 73.2 100 55.0
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 7.7e-11 72.0 54 68.5
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 2.5e-09 67.0 46 71.7
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 1.2e-08 64.7 63 60.3


User provided reference genes

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