Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.7e-174 615.9 322 100.0
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.2e-167 593.2 322 95.7
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.6e-156 556.2 322 89.1
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 6.2e-156 554.3 322 89.4
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 2.6e-154 548.9 322 88.8
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 2.6e-154 548.9 322 88.8
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 2.6e-154 548.9 322 88.8
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 3.4e-154 548.5 322 88.5
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 9.9e-154 547.0 322 89.1
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 9.9e-154 547.0 322 89.1
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 1.7e-153 546.2 323 88.5
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 2.7e-151 538.9 322 86.0
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 9.6e-149 530.4 323 86.7
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 9.6e-149 530.4 323 87.0
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-148 530.0 323 86.7
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.6e-148 529.6 323 86.7
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.6e-148 529.6 323 86.7
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 1.1e-147 526.9 322 86.3
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.4e-147 526.6 323 85.4
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.4e-147 526.6 323 85.4
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.4e-147 526.6 323 85.4
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.3e-145 520.0 322 82.0
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.7e-145 519.6 323 85.1
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 8.4e-145 517.3 322 84.5
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 3.2e-144 515.4 322 83.9
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 6.6e-142 507.7 319 84.0
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 6.6e-142 507.7 320 80.6
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.8e-139 499.6 323 81.1
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 7.1e-136 487.6 322 80.7
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 9.3e-128 460.7 321 74.5
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 1.6e-127 459.9 321 74.5
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.1e-91 339.3 326 57.1
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 3.1e-91 339.3 326 57.1
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 9.1e-91 337.8 317 57.4
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.3e-89 334.0 316 57.0
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.2e-89 333.2 326 56.4
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.5e-88 329.7 317 56.2
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.7e-87 326.2 315 55.6
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 6.1e-87 325.1 297 56.6
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 2.3e-86 323.2 315 52.7
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 2.6e-85 319.7 321 52.6
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 4.4e-85 318.9 308 57.5
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 4.8e-84 315.5 326 53.7
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.1e-83 314.3 318 53.5
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.1e-83 312.4 328 52.4
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.5e-82 309.3 211 76.3
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 7.7e-82 308.1 300 53.0
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 2.2e-81 306.6 305 53.8
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 8.5e-81 304.7 320 52.2
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.5e-80 303.1 318 50.9
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 5.5e-80 302.0 324 52.2
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 8.0e-79 298.1 330 50.3
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.3e-78 296.6 322 53.1
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.0e-78 296.2 316 51.3
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 8.8e-78 294.7 320 50.0
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.5e-77 293.9 318 51.9
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 1.5e-77 293.9 323 50.2
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.6e-77 293.1 318 50.9
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 7.5e-77 291.6 317 51.1
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 1.7e-76 290.4 335 51.3
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.8e-76 289.7 317 50.8
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.9e-76 288.9 315 50.2
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 6.3e-76 288.5 327 48.9
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 6.3e-76 288.5 316 49.7
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 1.1e-75 287.7 324 49.7
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.4e-75 287.3 328 49.4
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 2.4e-75 286.6 327 48.6
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 3.1e-75 286.2 293 53.2
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 3.1e-75 286.2 373 46.9
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 9.2e-75 284.6 322 50.3
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.6e-74 283.9 300 50.3
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 2.0e-74 283.5 301 50.5
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 2.0e-74 283.5 328 49.4
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 3.5e-74 282.7 324 48.8
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.0e-73 281.2 281 50.9
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 8.6e-73 278.1 327 47.7
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 2.5e-72 276.6 317 47.9
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.5e-72 276.6 324 48.8
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 4.3e-72 275.8 321 47.4
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 5.6e-72 275.4 319 48.3
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 9.5e-72 274.6 318 49.4
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.6e-71 273.9 307 49.8
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 2.8e-71 273.1 327 49.2
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 4.7e-71 272.3 272 52.6
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 6.1e-71 271.9 317 47.9
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.4e-70 270.8 316 46.2
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.4e-70 270.8 321 46.7
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 2.3e-70 270.0 328 46.3
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 2.3e-70 270.0 328 47.6
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 4.0e-70 269.2 302 47.4
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 5.2e-70 268.9 296 50.3
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 2.0e-69 266.9 323 45.2
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 2.6e-69 266.5 316 45.9
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 3.4e-69 266.2 319 47.0
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 4.4e-69 265.8 304 50.0
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 4.4e-69 265.8 317 48.6
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 4.4e-69 265.8 317 47.6
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 7.5e-69 265.0 321 46.1
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 9.8e-69 264.6 326 46.6
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.3e-68 264.2 304 50.0
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 2.9e-68 263.1 317 47.3
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 3.7e-68 262.7 324 45.7
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 3.7e-68 262.7 323 44.3
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 4.9e-68 262.3 317 47.3
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 6.4e-68 261.9 317 45.1
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 1.1e-67 261.2 326 45.7
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.4e-67 260.8 326 45.7
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.4e-67 260.8 320 46.6
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 2.4e-67 260.0 298 48.3
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 3.2e-67 259.6 319 46.7
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 2.7e-66 256.5 317 45.1
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 5.9e-66 255.4 325 44.9
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 1.3e-65 254.2 322 45.3
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.3e-65 253.4 294 48.0
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.9e-64 250.4 324 45.4
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 3.3e-64 249.6 317 45.1
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 2.1e-63 246.9 320 45.6
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 2.1e-63 246.9 326 45.4
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 3.6e-63 246.1 327 45.0
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.4e-62 244.2 396 41.4
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 6.8e-62 241.9 322 42.9
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 3.4e-61 239.6 327 44.3
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 7.5e-61 238.4 258 48.1
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 9.8e-61 238.0 128 96.1
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 1.7e-60 237.3 320 44.4
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.7e-60 237.3 423 38.5
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.9e-60 236.5 128 95.3
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.4e-59 234.2 320 44.4
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 4.1e-59 232.6 257 49.0
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 5.4e-59 232.3 284 46.8
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.0e-58 230.3 260 48.8
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 2.0e-58 230.3 321 42.1
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 3.5e-58 229.6 257 48.6
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 6.0e-58 228.8 320 42.8
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.0e-57 228.0 320 42.5
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 1.0e-57 228.0 319 42.0
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 3.6e-55 219.5 317 43.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 3.6e-47 193.0 338 37.3
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 9.2e-43 178.3 225 44.0
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 9.6e-40 168.3 245 37.1
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 5.2e-38 162.5 119 75.6
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.3e-33 147.9 155 50.3
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.7e-33 147.5 329 30.7
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 7.3e-32 142.1 315 33.3
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 6.2e-31 139.0 161 49.1
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.4e-30 137.9 162 47.5
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 1.7e-28 131.0 322 32.9
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.1e-27 128.3 315 29.2
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 6.9e-22 109.0 193 36.3
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.8e-20 103.2 119 49.6
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.3e-16 90.1 95 50.5
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-13 81.6 88 52.3
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.2e-13 81.6 88 52.3
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 1.0e-12 78.6 78 47.4
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 2.2e-12 77.4 75 48.0
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 2.2e-12 77.4 73 49.3
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.9e-12 77.0 98 46.9
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 4.2e-11 73.2 81 45.7
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.2e-10 71.6 73 45.2
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 5.1e-09 66.2 137 35.0
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 2.5e-08 63.9 100 35.0


User provided reference genes

Program Settings