Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.9e-254 882.1 461 100.0
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 6.0e-213 744.2 461 86.1
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.3e-183 646.7 495 73.7
Carub.0003s1274 Capsella rubella HOM05D003079 ORTHO05D003461 8.3e-170 600.9 475 72.2
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 2.1e-165 586.3 497 68.8
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 4.9e-162 575.1 479 72.0
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 9.8e-139 497.7 473 64.5
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 9.2e-137 491.1 475 64.0
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 2.1e-136 490.0 473 64.5
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 3.9e-135 485.7 472 63.8
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 3.9e-135 485.7 472 63.8
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 4.0e-132 475.7 442 65.2
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 1.9e-129 466.8 487 59.1
BcaB04g21010 Brassica carinata HOM05D003079 ORTHO05D003461 2.6e-123 446.4 466 62.7
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 1.2e-120 437.6 438 64.8
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 1.6e-120 437.2 438 64.6
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 4.6e-120 435.6 438 64.6
A01p40240 Brassica napus HOM05D003079 ORTHO05D003461 6.0e-120 435.3 459 60.3
BraA01t04061Z Brassica rapa HOM05D003079 ORTHO05D003461 2.3e-119 433.3 459 60.1
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.0e-90 338.2 478 49.6
THA.LOC104810573 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 3.3e-70 270.0 461 46.4
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 3.6e-48 196.8 541 34.9
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 8.8e-47 192.2 549 34.4
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 1.3e-45 188.3 541 33.8
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 2.8e-45 187.2 551 33.2
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 6.3e-45 186.0 541 33.6
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 8.3e-45 185.7 567 33.5
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 1.4e-44 184.9 561 34.2
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 4.5e-43 179.9 539 34.0
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 3.8e-42 176.8 464 35.3
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 5.0e-42 176.4 571 32.4
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 1.5e-41 174.9 570 31.4
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 2.5e-41 174.1 570 33.3
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 3.6e-40 170.2 497 34.0
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 6.1e-40 169.5 579 32.3
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.4e-39 168.3 574 32.2
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.8e-39 167.9 534 33.7
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 1.8e-39 167.9 530 31.9
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 4.0e-39 166.8 475 33.9
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 8.9e-39 165.6 613 30.8
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 1.2e-38 165.2 561 31.2
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.5e-38 164.9 523 31.4
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.5e-38 164.9 523 31.4
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.5e-38 164.9 523 31.4
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 3.4e-38 163.7 564 33.2
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 3.4e-38 163.7 571 33.8
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 5.7e-38 162.9 489 33.3
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 9.8e-38 162.2 565 32.6
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.7e-37 161.4 487 34.1
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 4.9e-37 159.8 574 31.7
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 8.3e-37 159.1 492 33.9
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 1.1e-36 158.7 507 32.7
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.4e-36 158.3 492 33.9
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 5.4e-36 156.4 475 33.1
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 7.0e-36 156.0 541 30.1
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 9.2e-36 155.6 570 30.9
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 9.2e-36 155.6 573 30.5
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 2.7e-35 154.1 495 31.9
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 3.5e-35 153.7 425 33.4
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 5.9e-35 152.9 548 31.9
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 5.9e-35 152.9 573 30.4
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.7e-34 151.4 597 30.5
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 2.3e-34 151.0 473 34.7
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 3.0e-34 150.6 444 36.3
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 8.6e-34 149.1 468 32.1
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 2.5e-33 147.5 532 31.0
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 3.3e-33 147.1 514 31.5
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 4.3e-33 146.7 491 31.6
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 4.3e-33 146.7 571 32.2
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 9.5e-33 145.6 483 30.8
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.6e-32 144.8 588 29.9
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 4.7e-32 143.3 461 33.2
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 8.0e-32 142.5 544 32.4
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 8.0e-32 142.5 515 30.7
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 1.1e-31 142.1 521 29.9
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 1.1e-31 142.1 592 30.6
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 1.1e-31 142.1 586 29.5
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.1e-31 142.1 566 32.0
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 1.4e-31 141.7 461 33.2
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.4e-31 141.7 462 32.0
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 1.8e-31 141.4 589 29.2
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 2.3e-31 141.0 559 30.4
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 3.1e-31 140.6 474 32.3
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 4.0e-31 140.2 513 33.3
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.2e-31 139.8 529 30.8
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 5.2e-31 139.8 548 29.7
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 6.8e-31 139.4 547 29.3
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 1.2e-30 138.7 548 29.4
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 2.0e-30 137.9 587 30.0
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 2.6e-30 137.5 584 29.3
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 4.4e-30 136.7 584 29.1
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 4.4e-30 136.7 578 30.4
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 7.5e-30 136.0 466 33.5
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.2e-29 134.4 568 31.3
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 6.4e-29 132.9 448 32.4
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 2.4e-28 131.0 502 31.1
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 5.4e-28 129.8 491 31.0
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 7.0e-28 129.4 593 28.2
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 1.2e-27 128.6 426 33.3
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.6e-27 128.3 480 30.2
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 2.7e-27 127.5 532 31.2
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 2.7e-27 127.5 598 29.3
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 3.5e-27 127.1 545 28.3
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 3.5e-27 127.1 584 29.8
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 4.6e-27 126.7 570 28.9
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 4.6e-27 126.7 548 28.3
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 6.0e-27 126.3 410 33.4
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 1.3e-26 125.2 468 31.2
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 1.7e-26 124.8 529 30.1
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 2.3e-26 124.4 576 29.5
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 3.0e-26 124.0 457 31.1
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 3.0e-26 124.0 468 31.2
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 6.6e-26 122.9 460 31.5
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.1e-25 122.1 483 30.0
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 2.5e-25 120.9 583 28.6
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 3.3e-25 120.6 541 29.0
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 4.3e-25 120.2 582 27.8
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 1.2e-24 118.6 556 28.6
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 1.6e-24 118.2 438 32.0
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 1.6e-24 118.2 483 29.8
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 2.1e-24 117.9 525 29.7
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 2.1e-24 117.9 516 28.9
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 8.1e-24 115.9 588 28.9
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 1.8e-23 114.8 522 29.5
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 2.3e-23 114.4 568 28.0
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 4.0e-23 113.6 346 34.4
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 2.0e-22 111.3 573 27.9
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 2.6e-22 110.9 549 30.4
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 7.5e-22 109.4 538 27.5
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 1.7e-21 108.2 535 26.7
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 6.4e-21 106.3 406 29.8
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 6.4e-21 106.3 296 36.5
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 3.2e-20 104.0 509 29.5
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 5.4e-20 103.2 524 27.3
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 6.0e-19 99.8 466 28.8
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.3e-18 98.6 311 35.4
Migut.M01581 Erythranthe guttata HOM05D003079 ORTHO05D003461 3.0e-18 97.4 530 27.0
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 5.1e-18 96.7 554 27.1
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 8.6e-18 95.9 331 32.9
Actinidia30350 Actinidia chinensis HOM05D003079 ORTHO05D003461 1.9e-17 94.7 341 32.0
Lsat_1_v5_gn_7_115521 Lactuca sativa HOM05D003079 ORTHO05D003461 5.6e-17 93.2 499 27.7
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 3.6e-16 90.5 557 26.2
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 2.4e-15 87.8 511 26.6
BcaC04g20138 Brassica carinata HOM05D003079 ORTHO05D003461 8.9e-15 85.9 160 41.2
BolC9t57600H Brassica oleracea HOM05D003079 ORTHO05D003461 8.9e-15 85.9 160 41.2
ECA236G4881 Erigeron canadensis HOM05D003079 ORTHO05D003461 1.2e-14 85.5 395 28.6
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.0e-14 84.7 387 28.2
C09p47450 Brassica napus HOM05D003079 ORTHO05D003461 7.6e-14 82.8 161 37.9
C03p63130 Brassica napus HOM05D003079 ORTHO05D003461 1.3e-13 82.0 83 62.7
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.2e-13 81.3 387 28.4
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 3.8e-13 80.5 169 37.9
A10p13440 Brassica napus HOM05D003079 ORTHO05D003461 8.4e-13 79.3 175 34.9
BraA10t43447Z Brassica rapa HOM05D003079 ORTHO05D003461 8.4e-13 79.3 175 34.9
BcaB08g35981 Brassica carinata HOM05D003079 ORTHO05D003461 3.2e-12 77.4 166 37.3
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 5.4e-12 76.6 620 25.2
CDE02G1968 Ceratophyllum demersum HOM05D000308 ORTHO05D003461 1.2e-11 75.5 419 26.5
BraA05t22422Z Brassica rapa HOM05D033162 ORTHO05D041063 1.0e-10 72.4 164 36.6
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 1.7e-10 71.6 328 28.7
Hund22967 Selenicereus undatus HOM05D003079 ORTHO05D003461 2.3e-10 71.2 408 27.2
A05p36180 Brassica napus HOM05D033162 ORTHO05D041063 3.9e-10 70.5 164 36.0
HPP92_007490 Vanilla planifolia HOM05D003079 ORTHO05D003461 8.7e-10 69.3 467 25.7
HPP92_022810 Vanilla planifolia HOM05D003079 ORTHO05D003461 2.5e-09 67.8 258 31.0
Ah.06g180930 Amaranthus hybridus HOM05D003079 ORTHO05D003461 5.6e-09 66.6 488 25.0
BcaC01g05490 Brassica carinata HOM05D041398 ORTHO05D032673 9.6e-09 65.9 65 60.0
C03p25880 Brassica napus HOM05D041398 ORTHO05D032673 9.6e-09 65.9 90 50.0
BolC3t14974H Brassica oleracea HOM05D041398 ORTHO05D032673 9.6e-09 65.9 65 60.0
AUR62043120 Chenopodium quinoa HOM05D003079 ORTHO05D003461 2.8e-08 64.3 257 28.0
EL10Ac4g08434 Beta vulgaris HOM05D003079 ORTHO05D003461 6.2e-08 63.2 540 23.7
Os04g0471300 Oryza sativa ssp. japonica HOM05D003079 ORTHO05D003461 1.1e-07 62.4 223 31.4
Medtr8g070940 Medicago truncatula HOM05D003079 ORTHO05D003461 1.4e-07 62.0 255 27.1
CiPaw.12G142900 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.8e-07 61.6 183 30.6
Ca_06048_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 2.4e-07 61.2 106 41.5
Ca_09552_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 2.4e-07 61.2 126 38.9
AUR62018863 Chenopodium quinoa HOM05D000686 ORTHO05D000512 3.4e-06 57.4 181 29.8
Psat4g111200 Pisum sativum HOM05D003079 ORTHO05D003461 3.4e-06 57.4 195 27.7


User provided reference genes

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