Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 1.2e-53 213.0 113 100.0
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 5.3e-46 187.6 114 91.2
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 3.2e-43 178.3 114 86.0
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 2.0e-40 169.1 114 82.5
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 5.7e-40 167.5 115 83.5
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 3.7e-39 164.9 115 80.9
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 3.7e-39 164.9 118 79.7
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 8.3e-39 163.7 118 78.8
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 8.3e-39 163.7 118 78.8
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 8.3e-39 163.7 118 78.8
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 8.3e-39 163.7 118 78.8
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 8.3e-39 163.7 113 83.2
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 4.5e-37 157.9 116 78.4
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 4.7e-34 147.9 102 79.4
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 1.0e-33 146.7 124 68.5
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 2.3e-28 129.0 90 74.4
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 5.9e-21 104.4 121 57.0
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 4.3e-11 71.6 107 45.8
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 6.2e-10 67.8 75 53.3
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.4e-09 66.6 84 48.8
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 1.4e-09 66.6 106 43.4
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 1.8e-09 66.2 112 43.8
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 2.3e-09 65.9 100 40.0
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 4.0e-09 65.1 106 42.5
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 5.2e-09 64.7 58 58.6
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 8.9e-09 63.9 102 42.2
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 1.2e-08 63.5 84 42.9
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 1.2e-08 63.5 56 62.5
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 1.2e-08 63.5 107 41.1
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 1.5e-08 63.2 110 44.5
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.5e-08 63.2 48 62.5
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 2.0e-08 62.8 47 68.1
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 2.6e-08 62.4 89 42.7
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.6e-08 62.4 74 45.9
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 2.6e-08 62.4 80 45.0
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 3.4e-08 62.0 83 49.4
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 3.4e-08 62.0 83 49.4
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 3.4e-08 62.0 78 44.9
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 3.4e-08 62.0 55 52.7
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 3.4e-08 62.0 47 68.1
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 4.4e-08 61.6 56 62.5
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 5.8e-08 61.2 46 65.2
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 5.8e-08 61.2 67 50.7
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 5.8e-08 61.2 48 68.8
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 7.5e-08 60.8 83 45.8
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 7.5e-08 60.8 72 52.8
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 9.9e-08 60.5 48 62.5
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 9.9e-08 60.5 48 62.5
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 9.9e-08 60.5 53 60.4
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.3e-07 60.1 84 41.7
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.3e-07 60.1 102 42.2
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.3e-07 60.1 105 41.9
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.3e-07 60.1 105 41.9
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 1.7e-07 59.7 58 51.7
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 2.2e-07 59.3 55 60.0
C05p54700 Brassica napus HOM05D003402 ORTHO05D003939 2.2e-07 59.3 49 75.5
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 2.2e-07 59.3 93 43.0
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 2.2e-07 59.3 72 45.8
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 2.2e-07 59.3 103 43.7
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 2.9e-07 58.9 103 42.7
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 2.9e-07 58.9 82 43.9
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 2.9e-07 58.9 103 43.7
BraA05t22435Z Brassica rapa HOM05D003402 ORTHO05D003939 3.7e-07 58.5 51 72.5
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 3.7e-07 58.5 46 67.4
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 4.9e-07 58.2 56 58.9
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 4.9e-07 58.2 83 43.4
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 4.9e-07 58.2 52 55.8
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 6.4e-07 57.8 101 39.6
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 6.4e-07 57.8 83 44.6
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 6.4e-07 57.8 52 57.7
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 8.3e-07 57.4 89 41.6
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 8.3e-07 57.4 101 39.6
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 8.3e-07 57.4 51 58.8
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 1.1e-06 57.0 48 60.4
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 1.1e-06 57.0 48 60.4
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 1.1e-06 57.0 89 41.6
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 1.1e-06 57.0 98 43.9
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.1e-06 57.0 108 39.8
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.1e-06 57.0 90 44.4
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 1.1e-06 57.0 98 36.7
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 1.1e-06 57.0 50 50.0
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 1.4e-06 56.6 87 42.5
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 1.4e-06 56.6 72 47.2
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 1.4e-06 56.6 101 37.6
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 1.4e-06 56.6 89 42.7
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 1.4e-06 56.6 90 44.4
A05p36350 Brassica napus HOM05D003402 ORTHO05D003939 1.9e-06 56.2 53 67.9
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.9e-06 56.2 101 38.6
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 1.9e-06 56.2 46 60.9
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 2.4e-06 55.8 48 64.6
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 2.4e-06 55.8 47 55.3
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 2.4e-06 55.8 55 58.2
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 3.2e-06 55.5 47 55.3
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 3.2e-06 55.5 106 38.7
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.2e-06 55.5 48 56.2
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 4.1e-06 55.1 89 41.6
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 5.4e-06 54.7 55 45.5
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 5.4e-06 54.7 56 50.0
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 5.4e-06 54.7 43 55.8
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 7.1e-06 54.3 96 42.7
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 7.1e-06 54.3 100 39.0
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 9.2e-06 53.9 46 60.9
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 9.2e-06 53.9 46 60.9
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 9.2e-06 53.9 46 60.9
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 9.2e-06 53.9 46 60.9
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 9.2e-06 53.9 46 60.9


User provided reference genes

Program Settings