Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 2238.4 1183 100.0
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 2201.8 1185 98.0
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 2149.0 1185 96.1
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 2139.4 1186 94.9
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 2117.4 1185 94.2
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 2085.8 1185 93.4
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 2078.9 1187 92.3
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 2061.6 1215 90.1
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 2061.2 1229 89.2
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 2061.2 1229 89.2
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 2061.2 1229 89.2
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 2055.4 1210 90.1
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 2000.3 1189 89.2
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1985.7 1175 89.8
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1980.3 1185 89.4
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1971.1 1175 89.3
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1929.1 1185 85.7
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1743.4 1164 81.4
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1572.8 1227 70.3
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1571.6 1251 68.9
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1557.3 1220 69.7
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1555.4 1220 69.6
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1542.7 1218 69.2
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1538.9 1252 67.8
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1510.4 1227 67.1
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1504.2 1227 66.7
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1502.3 1211 69.0
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1501.9 1212 68.3
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1498.0 1227 66.6
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1495.3 1211 68.5
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1489.6 1202 68.7
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1487.2 1208 67.2
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1483.8 1220 67.0
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1481.8 1228 66.4
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1475.7 1209 67.8
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1472.6 1217 67.2
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1466.1 1221 66.1
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1463.0 1217 66.5
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1459.1 1201 66.3
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1458.4 1216 66.1
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1453.0 1210 66.4
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1442.6 1210 66.4
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1437.9 1214 64.7
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1433.3 1218 65.7
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1432.5 1153 67.5
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1431.8 1197 65.1
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1430.2 1202 64.6
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1429.8 1139 67.9
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1427.2 1230 64.5
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1424.5 1195 65.4
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1421.4 1202 64.9
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1416.0 1193 64.6
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1412.9 1209 65.3
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1402.9 1217 63.5
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1401.3 1211 64.2
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1401.0 1226 62.9
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1400.2 1215 63.5
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1395.6 1219 63.8
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1395.2 1205 63.3
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1395.2 1194 65.0
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1393.3 1210 63.3
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1392.9 1219 62.8
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1386.3 1219 62.7
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1383.6 1201 64.6
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1383.2 1216 63.5
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1381.7 1217 62.9
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1380.2 1189 64.5
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1378.6 1219 62.4
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1377.8 1191 64.1
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1371.7 1225 63.3
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1371.7 1225 63.3
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1369.8 1217 64.4
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1366.7 1215 61.6
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1365.1 1213 63.0
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1360.5 1222 61.9
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1352.0 1172 64.2
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1350.9 1199 62.9
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1349.0 1148 63.9
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1340.9 1209 62.2
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1337.8 1138 64.0
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1334.3 1174 63.2
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1332.4 1219 60.9
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1330.1 1218 61.2
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1320.8 1221 60.4
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1319.7 1353 57.9
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1317.0 1149 64.4
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1312.0 1418 54.6
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1307.7 1239 60.0
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1295.0 1241 59.8
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1283.9 1154 62.2
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1263.1 1225 58.9
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1237.6 1145 61.3
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1196.4 1021 63.6
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1175.6 1195 56.4
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1144.8 1063 60.1
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1128.6 693 88.0
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1126.3 1119 56.2
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1125.2 1069 58.7
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1112.4 1182 56.4
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1092.0 1209 54.0
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 0.0e+00 1077.0 1203 54.2
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 1.6e-311 1072.8 821 70.5
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.6e-310 1069.7 671 84.8
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 4.7e-310 1068.1 980 60.6
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 8.3e-291 1004.2 1169 51.0
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 3.7e-283 978.8 1238 50.6
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 2.9e-275 952.6 1134 49.2
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 4.4e-260 902.1 770 64.2
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 4.0e-253 879.0 946 53.2
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.3e-251 874.0 680 68.1
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 1.1e-239 834.3 1264 43.5
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 1.3e-238 830.9 742 61.6
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-226 790.4 668 64.1
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 1.4e-224 784.3 1275 41.9
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.1e-221 774.6 633 65.6
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 7.4e-215 751.9 583 70.7
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 2.5e-210 736.9 665 60.8
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.2e-203 713.8 1163 41.2
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 2.1e-201 707.2 614 62.7
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 1.9e-186 657.5 1122 39.1
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.5e-178 631.3 580 59.8
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 4.1e-165 586.6 518 62.4
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 8.7e-147 525.8 455 62.4
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.6e-145 521.5 454 63.4
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.4e-141 508.4 1522 29.5
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 1.8e-136 491.5 425 63.5
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 9.6e-130 469.2 387 68.7
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 1.8e-120 438.3 402 61.9
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 1.4e-107 395.6 260 80.4
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 4.5e-95 354.0 413 50.4
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 4.0e-91 340.9 484 46.9
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.2e-90 339.3 306 58.2
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 7.5e-90 336.7 350 56.3
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 3.6e-84 317.8 240 75.0
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.8e-81 308.1 266 59.8
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.5e-79 300.8 400 45.0
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.6e-76 292.4 278 54.7
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 3.3e-61 241.5 211 60.7
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.5e-58 232.6 202 62.4
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 1.1e-51 209.9 125 85.6
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 6.8e-51 207.2 184 58.7
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.1e-44 185.7 211 50.7
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-43 183.0 209 50.7
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 5.2e-43 181.0 159 59.1
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-42 179.9 204 51.5
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.0e-42 179.1 208 50.0
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 3.4e-42 178.3 165 62.4
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.6e-34 152.1 172 51.2
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.6e-34 152.1 134 55.2
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.9e-33 147.9 133 63.9
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.4e-33 147.5 131 55.0
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 2.4e-32 145.6 150 50.0
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 2.1e-31 142.5 130 54.6
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 9.0e-27 127.1 116 52.6
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.4e-25 120.9 122 54.1
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.1e-23 115.9 111 52.3
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.5e-21 109.0 235 35.3
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.8e-19 102.8 64 78.1
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.2e-18 100.1 101 63.4
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.5e-18 99.8 101 63.4
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 3.2e-16 92.0 57 82.5
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 4.2e-16 91.7 175 40.6
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.9e-13 82.8 64 64.1
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.4e-11 76.6 195 28.7
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 3.4e-10 72.0 110 50.0
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 1.3e-09 70.1 136 41.2
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 2.9e-09 68.9 78 52.6
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 6.5e-09 67.8 123 33.3
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 1.4e-08 66.6 83 43.4
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 4.6e-07 61.6 79 57.0
BcaB04g18705 Brassica carinata HOM05D004065 ORTHO05D004806 2.3e-06 59.3 75 58.7
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 6.7e-06 57.8 132 38.6


User provided reference genes

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