Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 2.0e-115 419.1 211 100.0
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 2.9e-114 415.2 211 99.1
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 1.2e-112 409.8 211 97.6
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 6.8e-111 404.1 211 95.7
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 7.5e-110 400.6 211 94.8
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 6.3e-109 397.5 211 93.8
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 8.6e-106 387.1 211 91.0
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 2.3e-103 379.0 211 89.1
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 6.8e-103 377.5 211 89.1
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 4.1e-100 368.2 204 88.7
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 7.0e-100 367.5 215 86.5
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 1.6e-99 366.3 204 88.2
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 7.3e-89 330.9 192 84.9
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 1.5e-86 323.2 209 75.6
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 3.4e-86 322.0 209 75.6
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 7.6e-86 320.9 209 75.1
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 7.6e-86 320.9 209 75.1
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 7.6e-86 320.9 209 75.1
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 1.9e-84 316.2 209 72.7
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 7.1e-84 314.3 209 74.6
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 1.7e-82 309.7 195 75.4
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 1.7e-77 293.1 210 69.0
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 3.8e-77 292.0 210 69.0
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 2.4e-76 289.3 217 67.3
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 3.2e-76 288.9 205 69.8
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.2e-76 288.5 213 67.6
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.2e-76 288.5 213 67.6
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.2e-75 287.0 213 67.1
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 2.7e-75 285.8 213 66.7
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 4.6e-75 285.0 212 66.5
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 6.0e-75 284.6 213 66.7
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 6.0e-75 284.6 212 67.9
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 6.0e-75 284.6 212 66.5
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 7.8e-75 284.3 209 68.4
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 1.7e-74 283.1 213 65.7
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 1.7e-74 283.1 213 66.2
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 1.7e-74 283.1 212 66.5
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 3.0e-74 282.3 212 66.0
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 6.6e-74 281.2 212 66.0
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 8.7e-74 280.8 212 66.0
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 8.7e-74 280.8 191 71.7
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.1e-73 280.4 210 66.2
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 1.1e-73 280.4 209 66.0
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.5e-73 280.0 212 66.0
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 1.5e-73 280.0 212 65.6
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.5e-73 279.3 207 66.7
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 4.3e-73 278.5 210 67.1
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 4.3e-73 278.5 213 64.8
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 7.3e-73 277.7 210 65.7
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 9.6e-73 277.3 207 66.2
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.3e-72 276.9 206 66.5
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 1.3e-72 276.9 213 64.3
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 2.1e-72 276.2 210 66.2
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 2.8e-72 275.8 205 67.3
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 4.8e-72 275.0 205 67.3
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 4.8e-72 275.0 212 64.2
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 6.2e-72 274.6 212 65.1
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 6.2e-72 274.6 205 67.3
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 6.2e-72 274.6 212 64.6
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 8.1e-72 274.2 205 64.4
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 8.1e-72 274.2 209 65.6
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 1.1e-71 273.9 205 64.4
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.1e-71 273.9 210 64.8
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 2.4e-71 272.7 205 66.8
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 2.4e-71 272.7 190 70.0
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 6.9e-71 271.2 212 64.6
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 6.9e-71 271.2 211 66.4
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 9.0e-71 270.8 205 64.4
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 1.2e-70 270.4 210 64.8
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 1.2e-70 270.4 210 65.2
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 2.0e-70 269.6 210 64.8
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 2.6e-70 269.2 212 63.2
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 4.4e-70 268.5 211 64.5
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 7.6e-70 267.7 227 61.2
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 1.3e-69 266.9 213 63.8
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 1.7e-69 266.5 205 64.9
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 1.7e-69 266.5 212 65.1
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 8.4e-69 264.2 205 62.9
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 1.1e-68 263.8 213 63.8
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 1.4e-68 263.5 216 63.0
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 2.4e-68 262.7 211 62.6
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 2.4e-68 262.7 196 67.3
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 3.2e-68 262.3 206 63.6
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 3.2e-68 262.3 213 63.8
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 3.2e-68 262.3 205 62.9
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 3.5e-67 258.8 211 62.1
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 6.0e-67 258.1 213 62.0
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 6.6e-66 254.6 209 58.9
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 1.9e-65 253.1 214 62.6
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 3.3e-65 252.3 210 60.0
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 5.6e-65 251.5 212 62.3
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 2.4e-63 246.1 213 61.0
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 2.4e-63 246.1 213 61.0
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 2.4e-63 246.1 213 61.0
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 3.1e-63 245.7 213 61.0
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 3.1e-63 245.7 212 58.0
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 7.6e-62 241.1 205 58.5
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 4.9e-61 238.4 237 55.3
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 1.2e-59 233.8 181 65.7
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.2e-59 233.8 200 55.0
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 3.9e-58 228.8 208 53.4
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 1.9e-57 226.5 154 70.1
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 2.5e-57 226.1 203 59.1
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 6.2e-56 221.5 214 53.7
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 1.4e-55 220.3 156 67.9
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.8e-55 219.9 210 55.2
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 6.9e-55 218.0 185 55.1
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 2.6e-54 216.1 180 56.7
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 3.2e-52 209.1 189 53.4
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 9.3e-52 207.6 142 67.6
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 2.0e-46 189.9 211 52.1
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 3.3e-41 172.6 207 45.4
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 6.5e-37 158.3 113 61.9
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 5.7e-33 145.2 209 39.7
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 3.1e-31 139.4 185 48.6
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 3.1e-31 139.4 136 58.1
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 1.0e-29 134.4 167 43.7
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 5.5e-28 128.6 88 77.3
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 7.2e-28 128.3 82 81.7
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 2.7e-27 126.3 180 38.9
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 3.6e-27 125.9 77 84.4
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 1.4e-26 124.0 79 69.6
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 2.4e-23 113.2 107 46.7
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 6.5e-21 105.1 152 46.1
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 2.5e-20 103.2 63 69.8
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 4.7e-19 99.0 148 45.3
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 3.0e-18 96.3 150 46.7
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 4.0e-18 95.9 105 46.7
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 2.4e-15 86.7 79 54.4
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 3.8e-13 79.3 46 76.1
BraA05t22495Z Brassica rapa HOM05D005838 ORTHO05D007177 4.7e-11 72.4 40 90.0
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 6.3e-08 62.0 49 61.2
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 1.2e-06 57.8 41 63.4


User provided reference genes

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