Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G24110 Arabidopsis lyrata HOM05D002489 ORTHO05D002653 1.6e-90 336.3 191 100.0
AT3G12480 Arabidopsis thaliana HOM05D002489 ORTHO05D002653 2.6e-77 292.4 192 88.0
Carub.0003s1181 Capsella rubella HOM05D002489 ORTHO05D002653 1.0e-73 280.4 191 84.8
Thhalv10021246m.g Eutrema salsugineum HOM05D002489 ORTHO05D002653 9.0e-70 267.3 192 81.2
CARHR086980 Cardamine hirsuta HOM05D002489 ORTHO05D002653 3.9e-65 251.9 192 81.8
Sp3g10610 Schrenkiella parvula HOM05D002489 ORTHO05D002653 3.3e-56 222.2 192 70.3
BraA01t04134Z Brassica rapa HOM05D002489 ORTHO05D002653 9.3e-51 204.1 192 69.8
BraA03t12917Z Brassica rapa HOM05D002489 ORTHO05D002653 7.9e-50 201.1 190 70.0
BcaB04g18680 Brassica carinata HOM05D002489 ORTHO05D002653 6.7e-49 198.0 191 69.1
BolC3t16839H Brassica oleracea HOM05D002489 ORTHO05D002653 1.1e-48 197.2 190 70.5
A03p37630 Brassica napus HOM05D002489 ORTHO05D002653 1.5e-48 196.8 189 68.8
C03p45620 Brassica napus HOM05D002489 ORTHO05D002653 4.3e-48 195.3 190 70.0
BcaB04g21076 Brassica carinata HOM05D002489 ORTHO05D002653 8.2e-47 191.0 193 65.8
C01p52760 Brassica napus HOM05D002489 ORTHO05D002653 1.3e-44 183.7 194 65.5
BolC1t05213H Brassica oleracea HOM05D002489 ORTHO05D002653 1.3e-44 183.7 194 65.5
BNapus_Darmor_BZH_scaffold_149p00010 Brassica napus HOM05D002489 ORTHO05D002653 5.0e-44 181.8 192 65.1
BcaC09g48244 Brassica carinata HOM05D002489 ORTHO05D002653 3.2e-43 179.1 192 64.1
Aa31sc1276G10 Aethionema arabicum HOM05D002489 ORTHO05D002653 1.0e-36 157.5 210 56.7
Thhalv10014248m.g Eutrema salsugineum HOM05D002489 ORTHO05D002653 1.1e-30 137.5 197 54.8
BraA10t44932Z Brassica rapa HOM05D002489 ORTHO05D002653 4.1e-30 135.6 200 54.0
BcaNung04199 Brassica carinata HOM05D002489 ORTHO05D002653 9.1e-30 134.4 200 53.5
BolC9t59663H Brassica oleracea HOM05D002489 ORTHO05D002653 9.1e-30 134.4 200 53.5
A10p28850 Brassica napus HOM05D002489 ORTHO05D002653 1.2e-29 134.0 200 53.5
Sp6g35820 Schrenkiella parvula HOM05D002489 ORTHO05D002653 1.2e-29 134.0 202 53.5
THA.LOC104809911 Tarenaya hassleriana HOM05D002489 ORTHO05D002653 1.7e-28 130.2 206 53.4
BcaC06g32520 Brassica carinata HOM05D002489 ORTHO05D002653 6.5e-28 128.3 199 53.8
CARHR206090 Cardamine hirsuta HOM05D002489 ORTHO05D002653 1.9e-27 126.7 190 51.1
C09p69190 Brassica napus HOM05D002489 ORTHO05D002653 7.2e-27 124.8 203 51.2
Carub.0006s0598 Capsella rubella HOM05D002489 ORTHO05D002653 4.7e-26 122.1 197 49.7
AL6G17230 Arabidopsis lyrata HOM05D002489 ORTHO05D002653 7.9e-26 121.3 202 50.0
THA.LOC104826742 Tarenaya hassleriana HOM05D002489 ORTHO05D002653 1.4e-25 120.6 206 51.9
BcaNung05711 Brassica carinata HOM05D002489 ORTHO05D002653 3.5e-21 105.9 82 70.7
FAN01G0190 Fragaria x ananassa HOM05D002489 ORTHO05D002653 9.4e-19 97.8 199 45.7
Duzib114G0058 Durio zibethinus HOM05D002489 ORTHO05D002653 3.6e-18 95.9 211 45.5
FAN10G0477 Fragaria x ananassa HOM05D002489 ORTHO05D002653 1.4e-17 94.0 199 44.7
FvH4_7g04210 Fragaria vesca HOM05D002489 ORTHO05D002653 1.8e-17 93.6 199 44.7
FAN03G2991 Fragaria x ananassa HOM05D002489 ORTHO05D002653 3.0e-17 92.8 199 44.7
FAN06G4066 Fragaria x ananassa HOM05D002489 ORTHO05D002653 3.0e-17 92.8 199 44.2
PGR031G2636 Punica granatum HOM05D002489 ORTHO05D002653 4.8e-15 85.5 200 44.0
Ciclev10002081m.g Citrus clementina HOM05D002489 ORTHO05D002653 6.3e-15 85.1 197 41.1
RcHm_v2.0_Chr1g0328761 Rosa chinensis HOM05D002489 ORTHO05D002653 6.3e-15 85.1 215 40.9
Medtr3g012030 Medicago truncatula HOM05D002489 ORTHO05D002653 1.1e-14 84.3 202 46.0
Duzib106G0143 Durio zibethinus HOM05D002489 ORTHO05D002653 1.8e-14 83.6 220 41.4
Gohir.D04G018800 Gossypium hirsutum HOM05D002489 ORTHO05D002653 4.1e-14 82.4 209 42.1
Gohir.D06G183800 Gossypium hirsutum HOM05D002489 ORTHO05D002653 4.1e-14 82.4 221 43.0
Gorai.010G215200 Gossypium raimondii HOM05D002489 ORTHO05D002653 4.1e-14 82.4 221 43.0
Gorai.012G022300 Gossypium raimondii HOM05D002489 ORTHO05D002653 7.0e-14 81.6 211 41.7
Ca_24030_v3 Cicer arietinum L. HOM05D002489 ORTHO05D002653 9.1e-14 81.3 214 39.7
Glyma.13G189400 Glycine max HOM05D002489 ORTHO05D002653 1.2e-13 80.9 192 40.6
Duzib128G0493 Durio zibethinus HOM05D002489 ORTHO05D002653 1.6e-13 80.5 209 42.1
Gohir.A05G396200 Gossypium hirsutum HOM05D002489 ORTHO05D002653 2.7e-13 79.7 213 41.3
Atru.chr4.883 Acer truncatum HOM05D002489 ORTHO05D002653 3.5e-13 79.3 198 40.9
Sabra03G0143000 Salix brachista HOM05D002489 ORTHO05D002653 3.5e-13 79.3 215 41.9
Thecc.10G138700 Theobroma cacao HOM05D002489 ORTHO05D002653 3.5e-13 79.3 213 42.3
TWI63G0515 Tripterygium wilfordii HOM05D002489 ORTHO05D002653 4.5e-13 79.0 212 39.6
Psat5g224160 Pisum sativum HOM05D002489 ORTHO05D002653 5.9e-13 78.6 201 42.8
Gohir.A06G173800 Gossypium hirsutum HOM05D002489 ORTHO05D002653 7.7e-13 78.2 221 42.5
Potri.003G192100 Populus trichocarpa HOM05D002489 ORTHO05D002653 7.7e-13 78.2 214 39.7
BcaB04g18672 Brassica carinata HOM05D002489 ORTHO05D002653 1.0e-12 77.8 75 61.3
Eucgr.J00664 Eucalyptus grandis HOM05D002489 ORTHO05D002653 1.3e-12 77.4 198 38.9
Manes.04G155300 Manihot esculenta HOM05D002489 ORTHO05D002653 2.9e-12 76.3 214 37.4
Prupe.2G047600 Prunus persica HOM05D002489 ORTHO05D002653 2.9e-12 76.3 234 39.3
Glyma.06G311400 Glycine max HOM05D002489 ORTHO05D002653 8.5e-12 74.7 204 40.7
Haze_02969 Corylus avellana HOM05D002489 ORTHO05D002653 1.9e-11 73.6 210 42.4
arahy.Tifrunner.gnm1.ann1.L34J1I Arachis hypogaea HOM05D002489 ORTHO05D002653 3.2e-11 72.8 194 40.2
Medtr8g041420 Medicago truncatula HOM05D002489 ORTHO05D002653 3.2e-11 72.8 211 37.0
VMungo1127G1287 Vigna mungo HOM05D002489 ORTHO05D002653 3.2e-11 72.8 190 39.5
Aqoxy2G00026_Aqoxy2G00027 Aquilegia oxysepala HOM05D002489 ORTHO05D002653 4.2e-11 72.4 193 39.4
arahy.Tifrunner.gnm1.ann1.1YL9TV Arachis hypogaea HOM05D002489 ORTHO05D002653 1.2e-10 70.9 206 41.7
arahy.Tifrunner.gnm1.ann1.CT41QQ Arachis hypogaea HOM05D002489 ORTHO05D002653 1.2e-10 70.9 194 40.2
arahy.Tifrunner.gnm1.ann1.M21JET Arachis hypogaea HOM05D002489 ORTHO05D002653 1.6e-10 70.5 206 41.7
LjContig00430g0026017 Lotus japonicus HOM05D002489 ORTHO05D002653 2.1e-10 70.1 199 39.7
Sed0016042 Sechium edule HOM05D002489 ORTHO05D002653 2.1e-10 70.1 202 41.1
Actinidia07005 Actinidia chinensis HOM05D002489 ORTHO05D002653 2.7e-10 69.7 207 38.6
GSVIVG01037394001 Vitis vinifera HOM05D002489 ORTHO05D002653 2.7e-10 69.7 213 38.0
COL.COLO4_21328 Corchorus olitorius HOM05D002489 ORTHO05D002653 3.6e-10 69.3 210 40.0
QL04p021817 Quercus lobata HOM05D002489 ORTHO05D002653 6.1e-10 68.6 208 39.4
Actinidia18374 Actinidia chinensis HOM05D002489 ORTHO05D002653 1.8e-09 67.0 202 37.6
Cc00_g08160 Coffea canephora HOM05D002489 ORTHO05D002653 1.8e-09 67.0 194 36.6
Lalb_Chr18g0048111 Lupinus albus HOM05D002489 ORTHO05D002653 1.8e-09 67.0 196 39.3
Nn7g36989 Nelumbo nucifera HOM05D002489 ORTHO05D002653 1.8e-09 67.0 201 40.3
Glyma.15G227300 Glycine max HOM05D002489 ORTHO05D002653 2.3e-09 66.6 198 36.4
Phvul.011G196500 Phaseolus vulgaris HOM05D002489 ORTHO05D002653 2.3e-09 66.6 193 36.8
vmacro04096 Vaccinium macrocarpon HOM05D002489 ORTHO05D002653 2.3e-09 66.6 202 40.1
Lalb_Chr03g0032591 Lupinus albus HOM05D002489 ORTHO05D002653 5.2e-09 65.5 198 38.4
Dinv31993 Davidia involucrata HOM05D002489 ORTHO05D002653 6.8e-09 65.1 194 38.1
Phvul.005G014300 Phaseolus vulgaris HOM05D002489 ORTHO05D002653 8.8e-09 64.7 199 38.7
Rhsim07G0072000 Rhododendron simsii HOM05D002489 ORTHO05D002653 1.2e-08 64.3 203 36.0
DCAR_006595 Daucus carota HOM05D002489 ORTHO05D002653 2.6e-08 63.2 198 38.9
DCAR_025311 Daucus carota HOM05D002489 ORTHO05D002653 2.6e-08 63.2 193 34.7
MD02G1273400 Malus domestica HOM05D002489 ORTHO05D002653 3.4e-08 62.8 237 35.4
ClCG11G013040 Citrullus lanatus HOM05D002489 ORTHO05D002653 4.4e-08 62.4 204 36.3
Lalb_Chr19g0132861 Lupinus albus HOM05D002489 ORTHO05D002653 7.5e-08 61.6 194 37.1
CsaV3_5G029530 Cucumis sativus L. HOM05D002489 ORTHO05D002653 1.3e-07 60.8 207 36.7
Cc01_g07160 Coffea canephora HOM05D002489 ORTHO05D002653 1.7e-07 60.5 198 36.9
MELO3C011797.2 Cucumis melo HOM05D002489 ORTHO05D002653 1.7e-07 60.5 206 36.4
Cfa010969 Carpinus fangiana HOM05D002489 ORTHO05D002653 2.2e-07 60.1 219 37.4
TWI15G0844 Tripterygium wilfordii HOM05D002489 ORTHO05D002653 2.8e-07 59.7 207 37.2
vmacro13785 Vaccinium macrocarpon HOM05D002489 ORTHO05D002653 2.8e-07 59.7 200 34.5
CANSAT56G2669 Cannabis sativa HOM05D002489 ORTHO05D002653 3.7e-07 59.3 220 36.4
CSS0027937 Camellia sinensis var. sinensis HOM05D002489 ORTHO05D002653 6.3e-07 58.5 210 39.0
MBI19_g39605_MAGBIO Magnolia biondii HOM05D002489 ORTHO05D002653 6.3e-07 58.5 139 38.8
Manes.11G008800 Manihot esculenta HOM05D002489 ORTHO05D002653 6.3e-07 58.5 223 35.9
MSTRG.5082 Avicennia marina HOM05D002489 ORTHO05D002653 1.1e-06 57.8 192 39.6
CDE04G1622 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 1.1e-06 57.8 189 33.3
Ca_14212_v3 Cicer arietinum L. HOM05D002489 ORTHO05D002653 1.1e-06 57.8 201 39.3
Potri.001G033200 Populus trichocarpa HOM05D002489 ORTHO05D002653 1.1e-06 57.8 224 34.4
Lj3g0021581 Lotus japonicus HOM05D002489 ORTHO05D002653 2.4e-06 56.6 201 36.8
LjContig00564g0014208 Lotus japonicus HOM05D002489 ORTHO05D002653 3.1e-06 56.2 195 33.8
Rhsim13G0202300 Rhododendron simsii HOM05D002489 ORTHO05D002653 3.1e-06 56.2 204 36.8
Nn2g14603 Nelumbo nucifera HOM05D002489 ORTHO05D002653 4.1e-06 55.8 206 36.4
CiPaw.14G010800 Carya illinoinensis HOM05D002489 ORTHO05D002653 7.0e-06 55.1 207 36.7
MD07G1042300 Malus domestica HOM05D002489 ORTHO05D002653 7.0e-06 55.1 241 33.2
Manes.01G176600 Manihot esculenta HOM05D002489 ORTHO05D002653 7.0e-06 55.1 196 37.8
PGR119G0475 Punica granatum HOM05D002489 ORTHO05D002653 7.0e-06 55.1 200 36.5
CANSAT54G0417 Cannabis sativa HOM05D002489 ORTHO05D002653 9.1e-06 54.7 213 33.3
CiPaw.14G108000 Carya illinoinensis HOM05D002489 ORTHO05D002653 9.1e-06 54.7 199 36.2
Hma1.2p1_2592F.1_g325030 Hydrangea macrophylla HOM05D002489 ORTHO05D002653 9.1e-06 54.7 192 34.9
VMungo0647G2089 Vigna mungo HOM05D002489 ORTHO05D002653 9.1e-06 54.7 199 36.2


User provided reference genes

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