Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 3.0e-93 345.1 171 100.0
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.5e-89 331.6 172 95.9
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 2.2e-88 328.9 170 95.9
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.9e-88 328.6 167 94.6
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.1e-87 326.6 167 94.0
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 8.0e-86 320.5 167 92.2
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 1.8e-85 319.3 171 88.9
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 3.0e-85 318.5 171 88.3
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 3.0e-85 318.5 171 88.3
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 3.0e-85 318.5 171 88.3
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 5.2e-85 317.8 171 88.3
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 6.8e-85 317.4 171 88.3
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.5e-84 316.2 171 87.7
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 4.5e-81 304.7 167 86.8
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 3.4e-76 288.5 166 82.5
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 4.9e-51 204.9 146 65.8
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 8.3e-51 204.1 146 65.1
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 3.2e-50 202.2 146 64.4
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 4.1e-50 201.8 146 64.4
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 2.7e-49 199.1 146 64.4
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 1.0e-48 197.2 142 64.1
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.3e-48 196.8 146 62.3
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.7e-48 196.4 142 64.1
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 2.3e-48 196.1 143 63.6
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 2.3e-48 196.1 143 63.6
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 2.3e-48 196.1 142 64.1
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 3.9e-48 195.3 146 63.0
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 5.1e-48 194.9 146 61.0
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 5.1e-48 194.9 142 63.4
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 5.1e-48 194.9 142 63.4
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 5.1e-48 194.9 142 63.4
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 5.1e-48 194.9 142 63.4
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 5.1e-48 194.9 142 63.4
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 1.1e-47 193.7 142 62.7
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 1.1e-47 193.7 146 62.3
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.1e-47 193.7 146 63.0
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.1e-47 193.7 146 61.6
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 3.3e-47 192.2 148 61.5
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 3.3e-47 192.2 146 62.3
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 4.3e-47 191.8 142 62.7
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 4.3e-47 191.8 142 62.0
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 4.3e-47 191.8 146 62.3
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 5.6e-47 191.4 148 62.2
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 7.3e-47 191.0 146 61.6
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 2.1e-46 189.5 146 61.0
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 4.7e-46 188.3 146 61.0
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 4.7e-46 188.3 143 61.5
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 6.2e-46 188.0 140 62.1
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 8.1e-46 187.6 146 61.6
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.1e-45 187.2 146 61.0
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.1e-45 187.2 146 61.0
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.4e-45 186.8 143 60.8
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.4e-45 186.8 146 59.6
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 2.4e-45 186.0 146 58.9
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.4e-45 186.0 139 63.3
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 3.1e-45 185.7 146 58.9
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 3.1e-45 185.7 139 64.0
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 3.1e-45 185.7 146 60.3
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 4.0e-45 185.3 146 59.6
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 4.0e-45 185.3 143 60.1
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 4.0e-45 185.3 136 66.2
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 8.9e-45 184.1 140 62.9
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.5e-44 183.3 142 62.7
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.5e-44 183.3 139 61.9
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 1.5e-44 183.3 136 63.2
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 3.4e-44 182.2 139 61.9
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 4.4e-44 181.8 143 59.4
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 5.8e-44 181.4 140 60.7
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 5.8e-44 181.4 146 59.6
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 9.9e-44 180.6 146 59.6
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.3e-43 180.3 139 61.2
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.3e-43 180.3 146 59.6
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.3e-43 180.3 146 59.6
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.3e-43 180.3 136 61.8
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.3e-43 180.3 136 61.8
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.3e-43 180.3 146 59.6
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 1.3e-43 180.3 146 59.6
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.7e-43 179.9 139 60.4
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 1.7e-43 179.9 146 61.0
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 2.9e-43 179.1 148 58.1
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 2.9e-43 179.1 140 62.1
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 3.8e-43 178.7 140 60.7
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 3.8e-43 178.7 140 60.0
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 3.8e-43 178.7 148 58.1
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 3.8e-43 178.7 140 60.0
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 4.9e-43 178.3 142 59.2
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 4.9e-43 178.3 140 61.4
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 4.9e-43 178.3 140 60.0
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.9e-43 178.3 144 57.6
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.1e-42 177.2 141 60.3
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.4e-42 176.8 133 62.4
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 1.9e-42 176.4 139 60.4
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 1.9e-42 176.4 139 60.4
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.9e-42 176.4 141 58.2
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 2.4e-42 176.0 138 59.4
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.2e-42 175.3 144 58.3
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 4.2e-42 175.3 133 60.9
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 7.1e-42 174.5 136 60.3
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 7.1e-42 174.5 140 58.6
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 9.3e-42 174.1 144 57.6
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 9.3e-42 174.1 140 59.3
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.6e-41 173.3 133 60.2
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 2.7e-41 172.6 139 59.0
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 3.5e-41 172.2 136 60.3
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 4.6e-41 171.8 140 60.7
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 6.0e-41 171.4 140 57.9
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 6.0e-41 171.4 142 58.5
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 7.8e-41 171.0 162 53.7
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.0e-40 170.6 138 59.4
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.3e-40 170.2 148 57.4
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 1.7e-40 169.9 139 59.0
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 1.7e-40 169.9 140 59.3
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.5e-39 166.8 138 59.4
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 3.3e-39 165.6 136 54.4
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 3.3e-39 165.6 138 58.7
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 2.1e-38 162.9 140 56.4
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 3.6e-38 162.2 144 54.2
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.6e-38 162.2 142 53.5
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 1.4e-37 160.2 133 56.4
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 7.6e-36 154.5 140 52.1
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 9.9e-36 154.1 114 60.5
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.4e-34 150.2 133 55.6
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 1.2e-33 147.1 107 67.3
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.7e-32 143.3 159 47.2
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 8.1e-30 134.4 142 45.1
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.4e-28 129.0 110 61.8
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 9.9e-28 127.5 161 41.0
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 4.2e-26 122.1 149 43.6
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.5e-23 113.6 81 60.5
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.8e-22 109.4 156 41.0
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.2e-20 104.0 160 38.1
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.6e-20 102.8 156 38.5
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.3e-19 100.5 131 43.5
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 1.7e-19 100.1 79 55.7
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 6.5e-19 98.2 111 48.6
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 1.9e-18 96.7 154 35.7
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 1.2e-17 94.0 158 38.0
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 3.0e-16 89.4 133 33.8
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 8.7e-16 87.8 153 34.6
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 4.1e-13 79.0 116 39.7
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 4.1e-13 79.0 71 49.3
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.6e-12 76.3 65 58.5
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.3e-11 73.9 67 53.7
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.9e-11 72.8 63 55.6
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 1.9e-10 70.1 68 50.0
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.3e-07 59.3 96 37.5
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.3e-07 59.3 96 37.5
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 2.2e-06 56.6 80 37.5


User provided reference genes

Program Settings