Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 4.6e-106 387.9 191 100.0
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 1.7e-105 386.0 191 99.5
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.7e-105 386.0 191 99.0
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 2.5e-104 382.1 191 97.9
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.8e-103 378.6 189 97.4
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 4.7e-103 377.9 191 96.3
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.4e-102 376.3 191 95.3
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 1.8e-102 375.9 191 96.3
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 1.5e-101 372.9 188 95.7
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 2.0e-101 372.5 188 95.7
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 2.6e-101 372.1 188 95.2
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 2.6e-101 372.1 191 94.8
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 4.4e-101 371.3 188 95.2
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.7e-100 369.4 188 95.2
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 2.9e-100 368.6 191 92.1
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 3.7e-100 368.2 188 95.2
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 91.1
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 90.6
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.5e-98 361.7 191 90.1
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.5e-98 361.7 191 90.1
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 4.6e-98 361.3 191 89.5
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 4.6e-98 361.3 191 89.5
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 6.0e-98 360.9 190 90.5
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 6.0e-98 360.9 191 90.1
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 7.8e-98 360.5 191 90.1
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 89.5
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 89.0
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.0e-97 360.1 191 89.0
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.3e-97 359.8 191 89.5
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 1.7e-97 359.4 189 89.4
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 88.5
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 3.0e-97 358.6 188 91.0
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 89.0
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 89.0
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 3.9e-97 358.2 189 88.9
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 89.5
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 5.0e-97 357.8 191 88.5
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 5.0e-97 357.8 189 89.4
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 5.0e-97 357.8 191 88.0
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 5.0e-97 357.8 191 88.0
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 5.0e-97 357.8 191 88.0
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 6.6e-97 357.5 190 88.9
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 6.6e-97 357.5 190 88.9
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 8.6e-97 357.1 191 88.5
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 8.6e-97 357.1 191 88.0
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.1e-96 356.7 189 88.9
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.1e-96 356.7 191 87.4
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.1e-96 356.7 189 88.4
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.5e-96 356.3 191 89.0
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 1.9e-96 355.9 191 88.5
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.9e-96 355.9 191 88.0
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 2.5e-96 355.5 191 88.0
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 3.3e-96 355.1 189 88.9
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 3.3e-96 355.1 191 88.0
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 4.3e-96 354.8 189 88.9
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 4.3e-96 354.8 189 88.9
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 4.3e-96 354.8 189 88.9
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 5.6e-96 354.4 191 88.0
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 7.3e-96 354.0 191 88.0
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 7.3e-96 354.0 191 86.9
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 7.3e-96 354.0 191 86.4
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.2e-95 353.2 191 86.4
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.2e-95 353.2 191 86.9
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 1.2e-95 353.2 189 87.8
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.2e-95 353.2 189 88.4
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.6e-95 352.8 190 87.9
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 1.6e-95 352.8 191 86.4
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.1e-95 352.4 189 88.4
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 2.8e-95 352.1 188 87.8
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.8e-95 352.1 188 87.8
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 3.6e-95 351.7 191 86.4
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 4.7e-95 351.3 189 87.3
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 6.2e-95 350.9 191 86.9
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 6.2e-95 350.9 191 86.9
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 6.2e-95 350.9 191 86.9
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.1e-94 350.1 191 86.4
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.1e-94 350.1 191 85.9
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.4e-94 349.7 191 86.4
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 3.1e-94 348.6 201 84.1
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 4.0e-94 348.2 191 85.9
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 5.2e-94 347.8 188 85.6
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 2.0e-93 345.9 189 86.2
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.6e-93 345.5 195 85.1
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 5.8e-93 344.4 188 88.3
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 9.8e-93 343.6 191 90.1
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 2.9e-92 342.0 210 80.0
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 2.9e-92 342.0 216 77.8
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 4.9e-92 341.3 198 82.8
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 3.2e-91 338.6 183 88.5
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 3.2e-91 338.6 214 78.5
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 4.1e-91 338.2 188 85.1
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 7.1e-91 337.4 201 81.6
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 7.1e-91 337.4 193 83.4
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 4.6e-90 334.7 191 78.5
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 6.0e-90 334.3 232 73.3
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 6.6e-89 330.9 191 78.5
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 1.6e-87 326.2 191 76.4
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 1.4e-86 323.2 191 75.9
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.3e-86 322.4 189 76.2
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 3.1e-86 322.0 173 86.7
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.2e-85 320.1 189 76.2
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 1.5e-85 319.7 173 85.0
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.3e-84 316.6 191 74.3
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 6.4e-84 314.3 181 83.4
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 6.4e-84 314.3 181 83.4
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 8.4e-84 313.9 188 72.3
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 7.3e-80 300.8 188 69.7
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 3.6e-79 298.5 160 87.5
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 4.7e-79 298.1 160 88.8
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.1e-78 297.0 160 86.2
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.1e-78 297.0 167 83.2
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 3.5e-74 282.0 161 83.2
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 7.3e-72 274.2 171 77.8
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.2e-69 266.9 209 64.1
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.9e-67 259.6 188 64.9
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 2.0e-61 239.6 140 81.4
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.2e-60 236.1 188 60.6
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.9e-56 223.0 206 51.0
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 9.6e-56 220.7 183 55.7
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 4.0e-54 215.3 113 85.8
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 9.0e-54 214.2 106 94.3
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 9.0e-54 214.2 148 70.3
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 1.1e-51 207.2 112 84.8
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 2.5e-51 206.1 129 79.1
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 4.6e-50 201.8 109 89.9
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 3.3e-48 195.7 109 85.3
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 7.4e-48 194.5 109 83.5
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.6e-47 193.4 158 62.0
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 3.1e-38 162.5 82 90.2
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 9.1e-38 161.0 82 89.0
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 9.1e-38 161.0 80 91.2
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.0e-37 159.8 82 87.8
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 7.7e-37 157.9 83 84.3
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.4e-35 153.7 156 50.6
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 1.8e-33 146.7 71 97.2
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 2.3e-33 146.4 84 83.3
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 9.7e-32 141.0 74 85.1
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 2.2e-31 139.8 81 81.5
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 3.1e-30 136.0 71 87.3
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 5.0e-28 128.6 68 88.2
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 5.0e-28 128.6 68 88.2
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.4e-27 127.1 68 86.8
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 5.5e-27 125.2 84 78.6
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 1.6e-18 97.1 51 86.3
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 6.7e-17 91.7 47 87.2
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 1.7e-12 77.0 38 89.5
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 1.7e-12 77.0 38 89.5
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 1.7e-12 77.0 38 89.5
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 1.7e-12 77.0 38 89.5
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 2.2e-12 76.6 37 91.9


User provided reference genes

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