Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 2.2e-302 1041.6 547 100.0
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 4.4e-287 990.7 547 95.8
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 8.6e-283 976.5 547 94.7
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 2.0e-271 938.7 546 91.6
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 7.1e-269 930.2 547 90.3
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.3e-259 899.4 549 88.0
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 3.1e-256 888.3 551 87.5
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.7e-251 872.5 554 83.4
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 1.5e-247 859.4 551 85.8
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 5.3e-240 834.3 579 80.3
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 6.7e-235 817.4 549 82.3
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 4.3e-234 814.7 484 89.5
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.9e-229 799.3 570 78.9
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 3.7e-225 785.0 557 76.3
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 2.4e-216 755.7 545 78.0
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 2.4e-216 755.7 545 78.0
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 2.4e-216 755.7 545 78.0
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 5.0e-190 668.3 613 60.5
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 7.5e-186 654.4 595 60.3
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 4.8e-185 651.7 595 60.8
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 1.4e-184 650.2 552 63.2
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 3.1e-184 649.0 550 63.6
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 7.0e-184 647.9 595 60.0
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 2.0e-183 646.4 599 59.1
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 6.5e-182 641.3 620 57.9
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 1.1e-181 640.6 620 58.5
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 7.2e-181 637.9 607 58.3
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 2.1e-180 636.3 623 57.8
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 2.1e-180 636.3 612 58.2
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.8e-179 633.3 597 59.5
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 2.3e-179 632.9 615 58.0
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.2e-178 630.6 582 60.1
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 1.5e-178 630.2 614 56.0
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.5e-178 630.2 557 60.3
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 1.7e-177 626.7 619 56.9
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 2.2e-177 626.3 603 56.7
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 8.3e-177 624.4 590 58.6
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 3.1e-176 622.5 580 59.3
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 7.0e-176 621.3 594 57.1
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 4.5e-175 618.6 594 56.7
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 5.9e-175 618.2 610 58.0
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 2.9e-174 615.9 609 56.8
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 5.0e-174 615.1 598 57.4
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 5.0e-174 615.1 589 58.4
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 8.6e-174 614.4 642 54.2
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.1e-173 614.0 611 57.0
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.9e-173 613.2 607 55.5
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 4.3e-173 612.1 599 56.9
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 1.2e-172 610.5 592 56.4
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.6e-172 610.1 586 57.8
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 2.1e-172 609.8 651 54.7
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 2.8e-172 609.4 623 54.9
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 6.1e-172 608.2 598 57.2
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 8.0e-172 607.8 614 55.7
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 5.2e-171 605.1 578 59.5
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 6.8e-171 604.7 656 53.7
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.6e-170 602.8 626 55.6
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 1.3e-169 600.5 588 57.1
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 2.2e-169 599.7 619 54.4
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 2.9e-169 599.4 559 58.3
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 6.4e-169 598.2 594 56.7
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 5.4e-168 595.1 617 56.2
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 9.2e-168 594.3 584 55.8
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 1.6e-167 593.6 595 56.0
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 7.8e-167 591.3 598 56.2
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.0e-166 590.9 570 56.0
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 3.0e-166 589.3 592 54.6
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 1.2e-164 583.9 613 53.8
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 2.1e-164 583.2 581 56.3
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 4.7e-164 582.0 613 53.3
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 1.8e-163 580.1 546 57.0
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 2.3e-163 579.7 613 53.8
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 6.8e-163 578.2 648 51.4
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 7.5e-162 574.7 599 54.1
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.9e-160 570.1 612 53.4
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.9e-160 570.1 558 56.1
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 3.2e-160 569.3 599 53.1
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 1.3e-158 563.9 622 52.7
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 1.3e-158 563.9 621 51.7
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 5.0e-158 562.0 619 53.2
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 6.6e-158 561.6 527 59.0
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 7.3e-157 558.1 668 50.4
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.6e-156 557.0 635 53.1
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 1.0e-150 537.7 619 50.6
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 3.0e-150 536.2 619 50.6
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 5.1e-150 535.4 632 48.9
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 4.3e-149 532.3 785 44.7
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 7.3e-149 531.6 546 54.9
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 1.3e-145 520.8 630 49.0
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 4.9e-145 518.8 626 47.6
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 8.4e-145 518.1 576 53.5
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 4.1e-144 515.8 633 47.7
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 1.4e-139 500.7 581 48.0
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 8.4e-137 491.5 592 49.0
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 8.4e-137 491.5 592 49.0
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 1.1e-136 491.1 571 48.3
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.7e-135 486.5 304 82.9
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 5.6e-133 478.8 614 47.4
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 9.6e-133 478.0 568 48.9
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 8.1e-124 448.4 504 53.8
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 1.7e-121 440.7 573 45.2
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.4e-115 420.2 486 52.3
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 2.6e-114 416.8 589 40.4
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 3.2e-112 409.8 434 53.0
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 3.2e-112 409.8 493 50.3
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 2.7e-111 406.8 547 42.6
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 2.4e-107 393.7 290 68.6
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 2.9e-105 386.7 691 35.9
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 5.3e-99 365.9 580 40.3
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 2.2e-92 344.0 253 66.4
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 7.7e-90 335.5 490 44.3
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 2.9e-89 333.6 442 43.7
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 4.4e-61 240.0 203 65.5
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 5.2e-54 216.5 175 63.4
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 7.5e-45 186.0 116 75.0
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 4.9e-44 183.3 116 73.3
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 2.5e-40 171.0 101 83.2
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 6.4e-36 156.4 99 73.7
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 7.1e-35 152.9 91 83.5
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 7.1e-35 152.9 198 45.5
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.2e-30 136.7 114 60.5
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 8.9e-30 136.0 86 72.1
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 1.4e-27 128.6 527 25.4
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 2.1e-26 124.8 236 35.6
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.1e-24 119.0 74 71.6
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 6.6e-17 93.2 394 24.9
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 1.6e-15 88.6 158 33.5
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 2.2e-12 78.2 50 72.0
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 1.1e-11 75.9 288 28.8
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.8e-09 68.6 46 63.0
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 3.0e-09 67.8 56 55.4
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 1.4e-06 58.9 70 41.4


User provided reference genes

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