Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.1e-94 349.0 171 100.0
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.0e-77 293.5 174 83.9
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.1e-74 283.5 174 81.6
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.1e-71 273.5 174 78.7
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 1.2e-70 270.0 174 78.2
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.2e-67 259.2 175 73.1
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.3e-63 245.0 174 71.3
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 5.6e-63 244.6 175 69.7
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.3e-56 223.4 175 64.6
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 7.3e-55 217.6 175 61.1
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 7.3e-55 217.6 175 61.1
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 7.3e-55 217.6 175 61.1
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.7e-54 214.9 169 68.0
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.4e-53 213.4 172 66.9
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 1.4e-53 213.4 175 60.6
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 1.4e-53 213.4 175 60.6
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.8e-53 213.0 172 66.9
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 3.4e-52 208.8 168 61.9
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.4e-52 208.4 172 61.6
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 9.9e-52 207.2 172 61.6
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.4e-51 204.5 172 64.5
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.1e-50 203.8 172 61.0
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 1.9e-50 203.0 165 61.8
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.6e-49 199.9 155 62.6
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 2.1e-49 199.5 163 62.0
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 3.5e-49 198.7 173 63.6
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 7.8e-49 197.6 175 58.3
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 7.8e-49 197.6 175 58.3
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 7.8e-49 197.6 175 58.3
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 1.0e-48 197.2 161 62.7
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 1.0e-48 197.2 161 62.7
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 1.0e-48 197.2 161 62.7
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.0e-48 195.7 216 50.0
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 3.0e-48 195.7 174 58.6
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 3.0e-48 195.7 161 61.5
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.9e-48 195.3 175 63.4
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 8.6e-48 194.1 161 60.9
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 8.6e-48 194.1 161 60.9
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 1.1e-47 193.7 160 61.2
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.9e-47 193.0 174 58.6
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 2.5e-47 192.6 161 61.5
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 5.6e-47 191.4 161 60.2
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 5.6e-47 191.4 161 60.2
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 5.6e-47 191.4 161 60.2
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 9.6e-47 190.7 161 60.2
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 9.6e-47 190.7 161 60.2
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 3.6e-46 188.7 161 60.2
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.3e-43 180.3 172 57.0
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 3.8e-43 178.7 161 57.1
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 3.8e-43 178.7 161 57.1
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 8.4e-43 177.6 161 58.4
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 8.4e-43 177.6 152 58.6
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.9e-42 176.4 172 54.7
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 4.6e-41 171.8 140 58.6
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 8.1e-38 161.0 171 48.5
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 1.3e-35 153.7 130 57.7
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.3e-31 138.7 155 48.4
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 2.0e-28 129.8 158 48.1
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 1.4e-26 123.6 158 46.8
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 1.9e-26 123.2 143 40.6
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.0e-24 117.5 169 37.3
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.3e-24 116.3 141 39.7
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.1e-24 115.2 169 36.7
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 6.7e-24 114.8 166 38.6
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 3.3e-23 112.5 141 41.1
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 4.3e-23 112.1 124 40.3
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 3.7e-22 109.0 169 35.5
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 4.0e-21 105.5 82 57.3
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 7.6e-20 101.3 177 42.4
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.2e-19 99.8 186 34.9
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 2.5e-18 96.3 169 36.1
C05p55910 Brassica napus HOM05D007923 ORTHO05D009651 1.8e-13 80.1 67 67.2
BolC5t34259H Brassica oleracea HOM05D007923 ORTHO05D009651 1.8e-13 80.1 67 67.2
BcaC08g44685 Brassica carinata HOM05D007923 ORTHO05D009651 2.4e-13 79.7 69 65.2
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 3.1e-13 79.3 58 56.9
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 6.9e-13 78.2 110 36.4
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.2e-12 77.4 107 38.3
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 1.5e-12 77.0 151 27.2
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 3.4e-12 75.9 99 38.4
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 7.6e-12 74.7 140 32.9
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.0e-11 74.3 109 35.8
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.3e-11 73.9 161 31.1
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 1.3e-11 73.9 76 38.2
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 1.3e-11 73.9 86 39.5
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 2.9e-11 72.8 161 29.2
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 5.0e-11 72.0 79 39.2
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 6.5e-11 71.6 156 30.1
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 6.5e-11 71.6 118 33.9
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.1e-10 70.9 156 28.8
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 1.1e-10 70.9 74 43.2
Eucgr.C00225 Eucalyptus grandis HOM05D008402 ORTHO05D009651 1.1e-10 70.9 78 37.2
Eucgr.C00226 Eucalyptus grandis HOM05D042140 ORTHO05D009651 1.4e-10 70.5 78 37.2
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 4.2e-10 68.9 115 33.0
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 4.2e-10 68.9 106 34.0
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 7.1e-10 68.2 166 27.7
Thecc.09G158400 Theobroma cacao HOM05D002073 ORTHO05D001803 7.1e-10 68.2 79 38.0
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.6e-09 67.0 115 32.2
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.6e-09 67.0 166 30.1
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.7e-09 66.2 129 31.0
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 1.3e-08 63.9 117 30.8
Thhalv10005636m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.3e-08 63.9 121 29.8
MD13G1274700 Malus domestica HOM05D025175 ORTHO05D009651 1.3e-08 63.9 133 33.1
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 1.8e-08 63.5 117 31.6
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 1.8e-08 63.5 117 31.6
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 1.8e-08 63.5 171 25.7
AT2G21727 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.3e-08 63.2 112 31.2
TPR.G36159 Trifolium pratense HOM05D010700 ORTHO05D012225 2.3e-08 63.2 80 36.2
BcaC09g48231 Brassica carinata HOM05D007888 ORTHO05D009976 3.0e-08 62.8 162 26.5
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 3.0e-08 62.8 163 27.0
BcaC07g40200 Brassica carinata HOM05D007888 ORTHO05D009976 3.9e-08 62.4 163 27.0
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 3.9e-08 62.4 117 30.8
BolC1t05244H Brassica oleracea HOM05D007888 ORTHO05D009976 3.9e-08 62.4 137 27.7
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 3.9e-08 62.4 82 35.4
PGR031G1959 Punica granatum HOM05D007923 ORTHO05D009651 3.9e-08 62.4 86 36.0
BcaC01g00727 Brassica carinata HOM05D007888 ORTHO05D009976 5.1e-08 62.0 165 24.2
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 6.7e-08 61.6 163 28.8
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 6.7e-08 61.6 166 28.3
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 8.7e-08 61.2 163 28.2
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-07 60.8 163 26.4
C01p52980 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-07 60.8 163 27.0
C01p53000 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-07 60.8 137 27.7
C01p53150 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-07 60.8 88 35.2
BolC1t05230H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-07 60.8 162 26.5
Medtr1g054825 Medicago truncatula HOM05D008402 ORTHO05D000988 1.5e-07 60.5 91 33.0
BcaB04g21088 Brassica carinata HOM05D007888 ORTHO05D009976 1.9e-07 60.1 157 25.5
BcaC09g48238 Brassica carinata HOM05D007888 ORTHO05D009976 1.9e-07 60.1 115 31.3
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 1.9e-07 60.1 116 31.0
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 1.9e-07 60.1 163 25.2
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 1.9e-07 60.1 166 28.3
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 1.9e-07 60.1 116 31.0
Medtr2g438130 Medicago truncatula HOM05D010700 ORTHO05D012225 1.9e-07 60.1 77 32.5
BcaC09g48237 Brassica carinata HOM05D007888 ORTHO05D009976 2.5e-07 59.7 101 30.7
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 2.5e-07 59.7 166 28.3
Medtr6g007660 Medicago truncatula HOM05D010700 ORTHO05D012225 2.5e-07 59.7 76 35.5
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 2.5e-07 59.7 145 30.3
Thecc.10G125700 Theobroma cacao HOM05D002073 ORTHO05D001803 2.5e-07 59.7 80 36.2
BolC1t05222H Brassica oleracea HOM05D007888 ORTHO05D009976 3.3e-07 59.3 168 27.4
BolC1t05238H Brassica oleracea HOM05D007888 ORTHO05D009976 4.3e-07 58.9 163 26.4
Rhsim01G0015900 Rhododendron simsii HOM05D010700 ORTHO05D012225 5.7e-07 58.5 121 29.8
DCAR_002296 Daucus carota HOM05D010700 ORTHO05D012225 7.4e-07 58.2 132 27.3
Gohir.D05G328910 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.3e-06 57.4 79 35.4
QL02p094713 Quercus lobata HOM05D043071 ORTHO05D025275 1.6e-06 57.0 83 32.5
Rhsim03G0156800 Rhododendron simsii HOM05D008521 ORTHO05D009651 1.6e-06 57.0 91 31.9
C01p52960 Brassica napus HOM05D007888 ORTHO05D009976 2.2e-06 56.6 162 26.5
BolC1t05234H Brassica oleracea HOM05D007888 ORTHO05D009976 2.2e-06 56.6 162 26.5
Gohir.D05G326600 Gossypium hirsutum HOM05D002073 ORTHO05D001803 2.2e-06 56.6 78 37.2
PGSC0003DMG400011221 Solanum tuberosum HOM05D022492 ORTHO05D025233 2.2e-06 56.6 89 29.2
C01p52970 Brassica napus HOM05D007888 ORTHO05D009976 2.8e-06 56.2 81 33.3
Eucgr.B01478 Eucalyptus grandis HOM05D013157 ORTHO05D017001 2.8e-06 56.2 79 35.4
Glyma.06G245400 Glycine max HOM05D010700 ORTHO05D012225 2.8e-06 56.2 79 31.6
BolC1t05232H Brassica oleracea HOM05D007888 ORTHO05D009976 3.7e-06 55.8 162 25.9
BolC1t05233H Brassica oleracea HOM05D007888 ORTHO05D009976 3.7e-06 55.8 162 26.5
BolC1t05237H Brassica oleracea HOM05D007888 ORTHO05D009976 3.7e-06 55.8 162 26.5
Lj3g0005293 Lotus japonicus HOM05D010700 ORTHO05D012225 3.7e-06 55.8 76 32.9
BolC1t05235H Brassica oleracea HOM05D007888 ORTHO05D009976 4.8e-06 55.5 156 26.3
Psat4g125080 Pisum sativum HOM05D010700 ORTHO05D012225 4.8e-06 55.5 76 31.6
Potri.009G104800 Populus trichocarpa HOM05D008521 ORTHO05D001803 4.8e-06 55.5 106 24.5
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 6.3e-06 55.1 158 29.1
Dinv34528 Davidia involucrata HOM05D008521 ORTHO05D012225 6.3e-06 55.1 91 29.7
Duzib168G1766 Durio zibethinus HOM05D032872 ORTHO05D025275 6.3e-06 55.1 85 31.8
Gohir.D05G332256 Gossypium hirsutum HOM05D002073 ORTHO05D001803 6.3e-06 55.1 78 35.9
Psat0ss9438g0040 Pisum sativum HOM05D010700 ORTHO05D012225 6.3e-06 55.1 79 30.4
Gohir.D05G328233 Gossypium hirsutum HOM05D002073 ORTHO05D001803 8.2e-06 54.7 78 35.9
MD16G1259400 Malus domestica HOM05D012941 ORTHO05D009651 8.2e-06 54.7 97 27.8


User provided reference genes

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