Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 3.0e-76 288.5 150 100.0
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.9e-68 261.5 150 92.0
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 7.1e-62 240.7 139 89.9
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 6.6e-60 234.2 147 84.4
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.9e-59 232.6 150 84.0
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.2e-58 229.9 147 81.0
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 2.1e-58 229.2 151 80.1
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.8e-57 226.1 151 80.1
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.8e-57 226.1 151 80.1
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.8e-57 226.1 151 80.1
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 2.4e-57 225.7 151 79.5
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 2.4e-57 225.7 151 79.5
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 5.2e-57 224.6 147 81.6
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 5.2e-57 224.6 147 81.6
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 8.9e-57 223.8 147 79.6
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 3.4e-56 221.9 151 78.8
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.6e-56 220.7 148 78.4
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 5.1e-52 208.0 124 80.6
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.3e-51 204.1 146 73.3
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 6.2e-50 201.1 129 76.7
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.8e-49 199.5 129 75.2
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 3.1e-49 198.7 139 72.7
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 6.9e-49 197.6 129 75.2
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.5e-48 196.4 125 78.4
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.1e-46 190.3 123 74.0
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 4.2e-46 188.3 165 58.2
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 8.7e-44 180.6 134 64.2
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 6.2e-42 174.5 131 64.1
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.1e-41 173.7 140 62.1
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.1e-41 173.7 140 62.1
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.4e-41 173.3 140 62.1
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 3.1e-41 172.2 133 62.4
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 4.0e-41 171.8 135 60.0
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.2e-40 170.2 142 60.6
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.5e-40 169.9 135 60.0
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.4e-40 168.7 128 64.1
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.4e-40 168.7 140 60.7
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 3.4e-40 168.7 131 63.4
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 3.4e-40 168.7 124 66.1
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 4.5e-40 168.3 127 62.2
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 4.5e-40 168.3 134 61.2
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 5.8e-40 167.9 134 61.2
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 5.8e-40 167.9 135 60.7
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 5.8e-40 167.9 127 63.8
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 5.8e-40 167.9 127 61.4
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 5.8e-40 167.9 120 65.8
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 7.6e-40 167.5 132 61.4
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 9.9e-40 167.2 129 60.5
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.3e-39 166.8 134 61.9
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.7e-39 166.4 135 64.4
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.7e-39 166.4 136 58.1
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.7e-39 166.4 136 58.8
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.7e-39 166.4 127 62.2
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 2.2e-39 166.0 127 62.2
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 2.2e-39 166.0 132 61.4
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 2.9e-39 165.6 128 60.9
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 2.9e-39 165.6 127 62.2
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 2.9e-39 165.6 142 57.7
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 4.9e-39 164.9 132 56.8
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 4.9e-39 164.9 131 58.8
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 4.9e-39 164.9 128 61.7
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 4.9e-39 164.9 139 56.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.9e-39 164.9 129 62.8
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 6.4e-39 164.5 131 58.8
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 6.4e-39 164.5 120 65.0
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 8.4e-39 164.1 118 65.3
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 8.4e-39 164.1 132 59.1
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.1e-38 163.7 118 65.3
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.4e-38 163.3 137 56.2
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.9e-38 162.9 120 65.0
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 2.4e-38 162.5 123 61.8
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 2.4e-38 162.5 133 58.6
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 2.4e-38 162.5 140 56.4
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.2e-38 162.2 127 60.6
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 3.2e-38 162.2 127 60.6
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 4.2e-38 161.8 128 61.7
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 4.2e-38 161.8 133 58.6
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 5.4e-38 161.4 126 62.7
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 5.4e-38 161.4 127 60.6
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 5.4e-38 161.4 133 58.6
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 9.3e-38 160.6 125 58.4
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.2e-37 160.2 128 60.9
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.2e-37 160.2 131 58.8
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.2e-37 160.2 131 60.3
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.2e-37 160.2 120 62.5
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.2e-37 160.2 129 62.0
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.6e-37 159.8 123 64.2
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.7e-37 159.1 143 56.6
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.7e-37 159.1 120 61.7
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.5e-37 158.7 130 56.9
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 4.6e-37 158.3 132 59.1
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.6e-37 158.3 127 59.8
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.6e-37 158.3 131 60.3
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 4.6e-37 158.3 130 61.5
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 6.0e-37 157.9 121 62.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 6.0e-37 157.9 131 54.2
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 6.0e-37 157.9 118 63.6
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 7.9e-37 157.5 138 55.8
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 7.9e-37 157.5 127 59.8
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 7.9e-37 157.5 134 57.5
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 1.3e-36 156.8 134 56.0
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 2.3e-36 156.0 127 57.5
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 2.3e-36 156.0 120 59.2
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.0e-36 155.6 127 59.1
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 3.0e-36 155.6 123 60.2
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 3.0e-36 155.6 128 57.8
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 3.0e-36 155.6 131 59.5
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 3.9e-36 155.2 128 55.5
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 3.9e-36 155.2 128 60.2
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 5.1e-36 154.8 120 60.8
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 5.1e-36 154.8 121 62.0
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 6.7e-36 154.5 127 59.1
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.7e-36 154.5 127 59.1
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 8.7e-36 154.1 121 57.9
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.1e-35 153.7 139 57.6
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.1e-35 153.7 124 58.9
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.5e-35 153.3 120 60.0
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.9e-35 152.9 127 59.8
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 2.5e-35 152.5 121 62.0
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 4.3e-35 151.8 119 60.5
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 5.6e-35 151.4 121 58.7
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 5.6e-35 151.4 131 58.0
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.3e-34 150.2 121 62.0
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.3e-34 150.2 118 61.0
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.6e-34 149.8 127 58.3
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 2.8e-34 149.1 123 61.0
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 2.8e-34 149.1 120 60.0
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.8e-34 148.3 127 57.5
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 6.2e-34 147.9 122 58.2
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 6.2e-34 147.9 128 53.9
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 8.1e-34 147.5 123 56.9
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 4.0e-33 145.2 120 58.3
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 6.9e-33 144.4 121 56.2
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.0e-32 142.9 116 58.6
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 9.9e-32 140.6 122 54.1
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.3e-31 140.2 97 64.9
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.3e-31 140.2 140 50.0
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.2e-31 139.4 111 60.4
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 3.8e-31 138.7 120 54.2
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 4.9e-31 138.3 125 52.0
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 8.4e-31 137.5 127 55.1
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.1e-30 137.1 108 59.3
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.1e-30 137.1 120 52.5
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.9e-30 136.3 112 58.0
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 7.1e-30 134.4 129 55.8
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 7.1e-30 134.4 127 52.8
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 9.3e-30 134.0 119 52.1
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.3e-30 134.0 104 61.5
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 2.1e-29 132.9 129 51.9
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 6.7e-28 127.9 122 54.1
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 3.3e-27 125.6 117 51.3
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 2.1e-26 122.9 121 52.1
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.8e-26 122.5 109 54.1
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 3.7e-26 122.1 112 54.5
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 1.8e-25 119.8 140 48.6
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 9.0e-25 117.5 100 53.0
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.2e-24 117.1 120 47.5
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.3e-20 102.8 68 75.0
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 3.9e-20 102.1 80 62.5
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.1e-17 92.0 61 65.6
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 2.0e-16 89.7 112 38.4
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 2.2e-15 86.3 54 66.7
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 8.5e-15 84.3 57 64.9
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.1e-14 84.0 62 54.8
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.2e-14 82.4 65 60.0
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.2e-14 82.0 63 60.3
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.3e-12 76.3 54 61.1
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.0e-12 75.9 65 63.1
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.0e-12 75.9 65 63.1
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.5e-11 72.8 50 62.0
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 7.4e-11 71.2 119 36.1
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 6.3e-10 68.2 63 58.7
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.8e-09 66.6 91 42.9
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 2.4e-09 66.2 63 55.6
CARHR086300 Cardamine hirsuta HOM05D003887 ORTHO05D004523 2.4e-09 66.2 56 62.5
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 3.1e-09 65.9 63 54.0
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.5e-08 63.5 61 54.1
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 5.0e-07 58.5 47 59.6


User provided reference genes

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