Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 0.0e+00 1388.2 674 100.0
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 0.0e+00 1235.7 676 88.8
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 0.0e+00 1228.4 675 88.7
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 0.0e+00 1199.9 686 85.3
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 0.0e+00 1189.5 677 85.5
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 0.0e+00 1173.7 679 84.2
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 0.0e+00 1142.1 676 84.9
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 0.0e+00 1128.2 679 81.7
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 0.0e+00 1117.8 694 79.5
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.0e-309 1066.2 678 76.7
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.2e-297 1026.2 673 73.4
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.2e-294 1016.1 665 74.1
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.1e-294 1015.4 677 72.4
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.6e-294 1014.2 665 74.1
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 5.1e-293 1010.7 679 72.8
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 8.6e-293 1010.0 665 73.4
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 5.8e-289 997.3 679 73.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 5.1e-285 984.2 665 71.3
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 4.4e-281 971.1 665 70.7
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 4.4e-281 971.1 665 70.7
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 7.6e-281 970.3 665 70.2
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 9.9e-281 969.9 665 70.5
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.9e-279 965.7 666 70.7
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 6.7e-269 930.6 685 67.0
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 9.0e-266 920.2 674 66.9
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 8.8e-221 770.8 694 53.5
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 4.4e-220 768.5 697 54.1
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.3e-219 766.9 699 53.4
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.8e-218 763.1 704 52.8
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 4.1e-218 761.9 687 53.3
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 1.7e-216 756.5 716 51.8
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 5.0e-216 755.0 682 53.7
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 8.5e-216 754.2 670 53.9
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 5.5e-215 751.5 681 53.9
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 9.4e-215 750.7 680 54.7
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.6e-214 750.0 674 54.6
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.4e-213 746.9 671 53.4
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 8.8e-213 744.2 682 52.6
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 2.6e-212 742.7 696 52.3
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.4e-212 742.3 659 53.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 4.4e-212 741.9 687 53.9
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.7e-211 740.0 691 52.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.8e-211 739.2 691 52.7
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 3.7e-211 738.8 681 53.9
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.4e-210 736.9 693 52.2
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.4e-210 736.1 664 54.7
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 5.4e-210 734.9 688 52.2
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 9.1e-210 734.2 696 51.0
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.2e-209 733.8 659 53.0
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 1.2e-209 733.8 693 51.9
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.6e-209 733.4 690 51.6
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.6e-209 733.4 695 52.1
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 2.0e-209 733.0 693 51.8
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 3.5e-209 732.3 691 52.2
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 7.7e-209 731.1 685 52.1
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 7.7e-209 731.1 687 52.4
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 1.0e-208 730.7 693 52.2
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.3e-208 730.3 691 51.5
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.3e-208 730.3 684 52.2
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.3e-208 730.3 706 52.4
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.3e-208 729.6 659 52.7
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 5.0e-208 728.4 678 51.9
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 8.6e-208 727.6 659 53.3
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.5e-207 726.9 692 51.7
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.9e-207 726.5 677 52.3
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.9e-207 726.5 680 53.5
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.6e-206 723.4 714 51.4
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.6e-206 723.4 736 49.2
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 3.6e-206 722.2 674 52.4
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.4e-205 720.3 661 53.6
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.3e-205 719.5 650 53.2
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 5.2e-205 718.4 674 50.9
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.6e-204 716.1 675 52.4
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 3.4e-204 715.7 685 51.8
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 5.7e-204 714.9 674 51.3
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 7.5e-204 714.5 723 49.4
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.3e-203 713.8 688 51.2
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.3e-203 713.8 685 52.7
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.3e-203 713.8 720 49.2
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.7e-203 713.4 678 51.5
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 5.4e-202 708.4 667 51.0
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 7.0e-202 708.0 685 51.2
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.6e-201 706.8 671 51.4
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 4.5e-201 705.3 677 51.7
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 4.5e-201 705.3 675 51.6
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 3.3e-199 699.1 691 49.9
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 4.3e-199 698.7 662 51.5
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.2e-198 697.2 674 50.9
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.8e-198 696.0 688 49.4
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 4.7e-198 695.3 700 49.7
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.7e-198 695.3 688 49.6
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.8e-197 693.3 664 52.4
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 3.4e-196 689.1 612 54.4
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 5.8e-196 688.3 671 50.1
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 8.3e-195 684.5 684 51.2
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 1.1e-194 684.1 677 50.4
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.4e-194 683.7 687 49.5
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.1e-194 682.2 629 52.5
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 4.6e-193 678.7 677 49.3
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 6.6e-192 674.9 854 43.8
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 8.6e-192 674.5 446 76.7
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.2e-190 668.3 691 48.5
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.1e-189 666.0 624 52.6
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 5.8e-188 661.8 702 48.3
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 7.5e-188 661.4 682 49.7
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 5.4e-186 655.2 676 49.0
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.3e-183 645.6 687 48.2
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.1e-181 641.0 597 52.9
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.5e-180 637.1 602 51.8
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.6e-180 636.3 704 46.4
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 4.4e-180 635.6 675 48.3
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.4e-178 629.8 673 47.5
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 3.2e-178 629.4 686 46.6
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 7.8e-177 624.8 674 47.8
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.0e-176 622.9 675 47.6
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 5.1e-176 622.1 749 42.3
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 6.6e-176 621.7 719 46.0
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 3.3e-175 619.4 675 48.3
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 3.6e-174 615.9 643 49.5
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 2.4e-173 613.2 660 48.3
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.2e-172 610.9 680 46.0
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 4.9e-171 605.5 725 44.7
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.1e-170 601.7 673 47.8
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.0e-168 597.8 665 49.5
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 8.4e-163 578.2 341 81.5
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.5e-159 567.4 688 43.8
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.8e-156 555.4 681 43.0
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 6.9e-149 531.9 534 49.6
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.9e-146 523.9 678 41.9
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 5.5e-146 522.3 669 43.2
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 9.6e-143 511.5 532 49.1
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 8.2e-142 508.4 677 41.9
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.4e-133 480.3 561 44.6
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 6.5e-131 472.2 427 52.5
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.5e-124 449.5 367 68.1
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.9e-122 444.1 552 42.9
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.0e-120 436.8 378 56.1
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.7e-102 377.9 289 60.6
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 2.0e-95 354.4 235 78.3
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 4.5e-92 343.2 398 44.2
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 6.1e-89 332.8 231 66.7
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 4.4e-87 326.6 238 72.7
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 2.8e-86 323.9 314 47.1
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.9e-83 313.9 397 43.1
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 6.6e-83 312.8 565 35.2
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 2.1e-81 307.8 172 85.5
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.0e-80 305.4 401 41.6
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.5e-74 285.0 549 33.2
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 1.6e-68 265.0 569 32.0
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 4.1e-61 240.4 215 59.1
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.1e-56 225.7 155 67.7
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 6.0e-52 209.9 331 36.9
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.3e-51 208.8 211 50.7
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 4.2e-45 187.2 99 85.9
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 4.2e-45 187.2 99 85.9
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 4.2e-45 187.2 99 85.9
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.2e-44 185.7 137 62.8
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.7e-38 165.2 117 61.5
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.1e-37 162.5 119 58.8
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 6.0e-36 156.8 244 38.5
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 3.4e-23 114.4 212 31.1
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 1.7e-22 112.1 135 41.5
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 8.4e-22 109.8 59 84.7
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 9.3e-21 106.3 185 34.1
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.5e-18 99.0 268 29.1
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 8.2e-17 93.2 64 76.6
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.0e-15 88.6 45 88.9
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.0e-15 88.6 45 88.9
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 6.5e-14 83.6 77 48.1
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 6.5e-14 83.6 224 28.1
BraA01t04202Z Brassica rapa HOM05D004070 ORTHO05D107995 1.1e-10 72.8 53 67.9
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.9e-07 60.5 142 29.6


User provided reference genes

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