Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G22150 Arabidopsis lyrata HOM05D010059 ORTHO05D011752 1.1e-239 833.2 490 100.0
AT3G10680 Arabidopsis thaliana HOM05D010059 ORTHO05D011752 5.3e-199 698.0 492 86.4
Carub.0003s0991 Capsella rubella HOM05D010059 ORTHO05D011752 8.5e-149 531.2 537 65.4
CARHR085260 Cardamine hirsuta HOM05D010059 ORTHO05D011752 4.1e-135 485.7 485 64.9
Thhalv10020532m.g Eutrema salsugineum HOM05D010059 ORTHO05D011752 3.9e-125 452.6 522 60.2
BcaC05g29438 Brassica carinata HOM05D010059 ORTHO05D011752 9.9e-113 411.4 507 56.8
C05p57400 Brassica napus HOM05D010059 ORTHO05D011752 1.6e-110 404.1 513 55.8
BolC5t34396H Brassica oleracea HOM05D010059 ORTHO05D011752 1.6e-110 404.1 513 55.8
Sp3g09000 Schrenkiella parvula HOM05D010059 ORTHO05D011752 2.1e-110 403.7 493 60.2
A05p38500 Brassica napus HOM05D010059 ORTHO05D011752 1.3e-109 401.0 516 55.0
BraA05t22641Z Brassica rapa HOM05D010059 ORTHO05D011752 1.7e-109 400.6 516 55.0
BraA01t04230Z Brassica rapa HOM05D010059 ORTHO05D011752 9.0e-98 361.7 515 52.8
BcaB04g21185 Brassica carinata HOM05D010059 ORTHO05D011752 8.4e-96 355.1 659 46.3
BolC1t05368H Brassica oleracea HOM05D010059 ORTHO05D011752 3.4e-89 333.2 507 46.0
A01p41550 Brassica napus HOM05D010059 ORTHO05D011752 5.9e-73 279.3 515 46.4
THA.LOC104816481 Tarenaya hassleriana HOM05D010059 ORTHO05D011752 1.3e-43 181.8 487 40.7
Aa31LG3G3540 Aethionema arabicum HOM05D010059 ORTHO05D011752 2.8e-27 127.5 415 32.5
BcaB04g21184 Brassica carinata HOM05D010059 ORTHO05D011752 8.3e-27 125.9 395 32.7
Sabra08G0008700 Salix brachista HOM05D010059 ORTHO05D011752 4.0e-13 80.5 226 27.9
Potri.008G014000 Populus trichocarpa HOM05D027296 ORTHO05D037401 4.9e-11 73.6 253 28.1
Gorai.012G022900 Gossypium raimondii HOM05D014341 ORTHO05D011752 6.4e-11 73.2 118 27.1
Gohir.A03G163700 Gossypium hirsutum HOM05D010059 ORTHO05D000666 1.1e-10 72.4 90 36.7
MD02G1259500 Malus domestica HOM05D000881 ORTHO05D000666 1.1e-10 72.4 104 31.7
Gohir.A05G395900 Gossypium hirsutum HOM05D014341 ORTHO05D011752 1.9e-10 71.6 115 28.7
QL04p049792 Quercus lobata HOM05D000881 ORTHO05D000666 1.9e-10 71.6 103 37.9
Thecc.10G122500 Theobroma cacao HOM05D014341 ORTHO05D011752 3.2e-10 70.9 192 28.1
HanXRQChr11g0326381 Helianthus annuus HOM05D000881 ORTHO05D000666 4.1e-10 70.5 105 35.2
BcaC06g32196 Brassica carinata HOM05D000881 ORTHO05D000666 1.2e-09 68.9 84 33.3
AL6G14570 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 1.6e-09 68.6 107 30.8
CiPaw.13G046400 Carya illinoinensis HOM05D000881 ORTHO05D000666 1.6e-09 68.6 125 31.2
CiPaw.14G037000 Carya illinoinensis HOM05D000881 ORTHO05D000666 1.6e-09 68.6 128 32.0
Glyma.04G130100 Glycine max HOM05D000881 ORTHO05D000666 1.6e-09 68.6 114 29.8
Gohir.D02G187100 Gossypium hirsutum HOM05D010059 ORTHO05D000666 1.6e-09 68.6 90 33.3
Gorai.005G209500 Gossypium raimondii HOM05D010059 ORTHO05D000666 1.6e-09 68.6 90 33.3
Lsat_1_v5_gn_1_87140 Lactuca sativa HOM05D000881 ORTHO05D000666 1.6e-09 68.6 107 34.6
Carub.0006s0381 Capsella rubella HOM05D000881 ORTHO05D000666 2.0e-09 68.2 105 30.5
SalBow6G6574 Salvia bowleyana HOM05D000125 ORTHO05D000120 2.0e-09 68.2 120 30.8
BolC2t06177H Brassica oleracea HOM05D010059 ORTHO05D000666 2.7e-09 67.8 85 34.1
A03p01910 Brassica napus HOM05D000881 ORTHO05D000666 3.5e-09 67.4 82 34.1
BraA03t09561Z Brassica rapa HOM05D000881 ORTHO05D000666 3.5e-09 67.4 82 34.1
Thhalv10014066m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 4.6e-09 67.0 100 32.0
BcaB01g05921 Brassica carinata HOM05D000881 ORTHO05D000666 6.0e-09 66.6 82 34.1
A10p31250 Brassica napus HOM05D000881 ORTHO05D000666 6.0e-09 66.6 84 32.1
C03p02280 Brassica napus HOM05D000881 ORTHO05D000666 6.0e-09 66.6 82 34.1
C09p71870 Brassica napus HOM05D000881 ORTHO05D000666 7.8e-09 66.2 84 32.1
C09p71880 Brassica napus HOM05D000881 ORTHO05D000666 7.8e-09 66.2 99 32.3
BcaNung05155 Brassica carinata HOM05D000881 ORTHO05D000666 1.3e-08 65.5 82 34.1
CARHR208380 Cardamine hirsuta HOM05D000881 ORTHO05D000080 1.3e-08 65.5 82 32.9
MD07G1061000 Malus domestica HOM05D000881 ORTHO05D000666 1.3e-08 65.5 89 34.8
AT5G04890 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 1.7e-08 65.1 84 31.0
Aqoxy3G03278 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 2.3e-08 64.7 122 31.1
BcaC03g13137 Brassica carinata HOM05D000881 ORTHO05D000666 2.3e-08 64.7 85 32.9
C02p02100 Brassica napus HOM05D000881 ORTHO05D000666 2.3e-08 64.7 85 32.9
Cfa010462 Carpinus fangiana HOM05D045047 ORTHO05D000666 2.3e-08 64.7 237 23.6
MBI11_g07703_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 3.0e-08 64.3 116 31.9
Actinidia21135 Actinidia chinensis HOM05D001769 ORTHO05D001695 3.9e-08 63.9 150 27.3
Migut.N01922 Erythranthe guttata HOM05D000881 ORTHO05D000666 3.9e-08 63.9 116 31.0
Oeu038472.1 Olea europaea HOM05D000881 ORTHO05D000666 3.9e-08 63.9 256 22.7
HanXRQChr17g0559031 Helianthus annuus HOM05D000881 ORTHO05D000666 5.0e-08 63.5 107 32.7
BolC9t59936H Brassica oleracea HOM05D000881 ORTHO05D000666 6.6e-08 63.2 84 31.0
MD07G1061100 Malus domestica HOM05D000881 ORTHO05D000666 6.6e-08 63.2 89 32.6
Glyma.06G316200 Glycine max HOM05D000881 ORTHO05D000666 8.6e-08 62.8 247 26.3
Sp6g37930 Schrenkiella parvula HOM05D000881 ORTHO05D000666 8.6e-08 62.8 103 29.1
Glyma.08G230000 Glycine max HOM05D000881 ORTHO05D000666 1.1e-07 62.4 196 27.0
Peaxi162Scf00647g00136 Petunia axillaris HOM05D000881 ORTHO05D000666 1.1e-07 62.4 124 32.3
Gohir.A05G285600 Gossypium hirsutum HOM05D014341 ORTHO05D011752 1.5e-07 62.0 228 26.3
Actinidia24915 Actinidia chinensis HOM05D000881 ORTHO05D000666 1.9e-07 61.6 203 25.1
Oeu012471.1 Olea europaea HOM05D000881 ORTHO05D000666 1.9e-07 61.6 273 22.3
QL04p049805 Quercus lobata HOM05D000881 ORTHO05D000666 1.9e-07 61.6 103 35.0
TWI38G1417 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 1.9e-07 61.6 136 29.4
Aqoxy1G00549 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 2.5e-07 61.2 104 28.8
AUR62034145 Chenopodium quinoa HOM05D000881 ORTHO05D000666 2.5e-07 61.2 177 29.4
FvH4_7g05240 Fragaria vesca HOM05D000881 ORTHO05D000666 2.5e-07 61.2 241 26.6
Glyma.15G216700 Glycine max HOM05D000881 ORTHO05D000666 2.5e-07 61.2 196 25.5
THA.LOC104816480 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 2.5e-07 61.2 96 32.3
BcaB05g21742 Brassica carinata HOM05D000881 ORTHO05D000666 3.3e-07 60.8 82 31.7
A10p31260 Brassica napus HOM05D000881 ORTHO05D000666 3.3e-07 60.8 155 29.0
Psat5g229840 Pisum sativum HOM05D000881 ORTHO05D000666 3.3e-07 60.8 247 27.5
SalBow4G2822 Salvia bowleyana HOM05D000881 ORTHO05D000666 3.3e-07 60.8 100 30.0
CSS0028596 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 4.3e-07 60.5 118 29.7
Gohir.D04G019100 Gossypium hirsutum HOM05D014341 ORTHO05D011752 4.3e-07 60.5 87 29.9
Manes.14G075100 Manihot esculenta HOM05D000881 ORTHO05D000666 4.3e-07 60.5 123 25.2
RcHm_v2.0_Chr1g0331581 Rosa chinensis HOM05D000881 ORTHO05D000666 4.3e-07 60.5 247 25.5
Aa31LG11G5820 Aethionema arabicum HOM05D000881 ORTHO05D000666 5.6e-07 60.1 205 24.9
BraA10t45169Z Brassica rapa HOM05D000881 ORTHO05D000666 5.6e-07 60.1 164 28.7
Ciclev10018348m.g Citrus clementina HOM05D000881 ORTHO05D000666 5.6e-07 60.1 259 25.9
FAN06G2536 Fragaria x ananassa HOM05D000881 ORTHO05D000666 5.6e-07 60.1 245 25.7
VMungo0647G1281 Vigna mungo HOM05D000881 ORTHO05D000666 5.6e-07 60.1 110 30.0
CiPaw.11G038600 Carya illinoinensis HOM05D000881 ORTHO05D000666 7.3e-07 59.7 119 31.1
TPR.G38378 Trifolium pratense HOM05D000881 ORTHO05D000666 9.5e-07 59.3 126 27.8
EL10Ac4g08752 Beta vulgaris HOM05D000881 ORTHO05D000666 1.2e-06 58.9 254 26.8
Duzib132G0066 Durio zibethinus HOM05D000881 ORTHO05D000666 1.2e-06 58.9 201 24.9
Migut.D00720 Erythranthe guttata HOM05D000881 ORTHO05D000666 1.2e-06 58.9 99 30.3
FAN03G3143 Fragaria x ananassa HOM05D000881 ORTHO05D000666 1.2e-06 58.9 242 27.3
Cc00_g20150 Coffea canephora HOM05D000881 ORTHO05D000666 1.6e-06 58.5 143 28.7
ECA232G3228 Erigeron canadensis HOM05D000881 ORTHO05D000666 1.6e-06 58.5 167 27.5
Lj4g0004603 Lotus japonicus HOM05D000881 ORTHO05D000666 1.6e-06 58.5 116 25.9
Lalb_Chr12g0196721 Lupinus albus HOM05D000881 ORTHO05D000666 1.6e-06 58.5 116 25.0
Medtr3g007660 Medicago truncatula HOM05D000881 ORTHO05D000666 1.6e-06 58.5 248 25.0
VMungo0647G2372 Vigna mungo HOM05D011778 ORTHO05D012624 1.6e-06 58.5 78 39.7
Lj3g0025354 Lotus japonicus HOM05D000881 ORTHO05D000666 2.1e-06 58.2 126 30.2
Phvul.009G189900 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 2.1e-06 58.2 103 26.2
Psat4g053640 Pisum sativum HOM05D000881 ORTHO05D000666 2.1e-06 58.2 109 27.5
VMungo1309G1551 Vigna mungo HOM05D000881 ORTHO05D000666 2.1e-06 58.2 110 25.5
Actinidia17465 Actinidia chinensis HOM05D038880 ORTHO05D000666 2.8e-06 57.8 183 30.1
BraA02t04826Z Brassica rapa HOM05D000881 ORTHO05D000666 2.8e-06 57.8 162 27.2
CSS0013808 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 2.8e-06 57.8 118 29.7
AUR62014290 Chenopodium quinoa HOM05D000881 ORTHO05D000666 2.8e-06 57.8 203 27.6
Eucgr.G02656 Eucalyptus grandis HOM05D000881 ORTHO05D000666 2.8e-06 57.8 250 25.2
Oeu027605.1 Olea europaea HOM05D000881 ORTHO05D000666 2.8e-06 57.8 209 25.8
Sed0019713 Sechium edule HOM05D000881 ORTHO05D000666 2.8e-06 57.8 95 29.5
PGSC0003DMG400027498 Solanum tuberosum HOM05D000881 ORTHO05D000666 2.8e-06 57.8 109 32.1
Lsat_1_v5_gn_4_107421 Lactuca sativa HOM05D000881 ORTHO05D000666 3.6e-06 57.4 97 28.9
unitig_0.g2304 Utricularia gibba HOM05D000881 ORTHO05D000080 3.6e-06 57.4 183 24.0
Glyma.17G097400 Glycine max HOM05D000881 ORTHO05D000666 4.7e-06 57.0 117 27.4
Nitab4.5_0018311g0010 Nicotiana tabacum HOM05D000881 ORTHO05D000666 4.7e-06 57.0 112 25.9
Hund06059 Selenicereus undatus HOM05D000881 ORTHO05D000666 4.7e-06 57.0 214 25.2
Actinidia19059 Actinidia chinensis HOM05D000881 ORTHO05D000666 6.2e-06 56.6 97 29.9
ECA232G2750 Erigeron canadensis HOM05D000259 ORTHO05D000155 6.2e-06 56.6 93 31.2
PGR142G2192 Punica granatum HOM05D000881 ORTHO05D000666 6.2e-06 56.6 111 27.9
Sc04g0002460 Simmondsia chinensis HOM05D000881 ORTHO05D000666 6.2e-06 56.6 91 24.2
HPP92_028054 Vanilla planifolia HOM05D000881 ORTHO05D000666 6.2e-06 56.6 118 28.0
Duzib114G0679 Durio zibethinus HOM05D014341 ORTHO05D011752 8.1e-06 56.2 253 26.9
Phvul.011G184300 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 8.1e-06 56.2 224 26.8


User provided reference genes

Program Settings