Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 7.4e-195 683.7 352 100.0
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 4.0e-172 608.2 338 93.8
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 1.6e-165 586.3 339 90.3
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 9.1e-153 543.9 338 84.3
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 2.3e-148 529.3 338 82.2
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 1.5e-147 526.6 331 82.8
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 3.6e-141 505.4 340 80.6
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 1.3e-138 496.9 340 78.5
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 1.1e-137 493.8 340 78.2
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 1.3e-135 486.9 337 78.6
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.3e-135 486.9 337 78.6
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 5.6e-134 481.5 336 78.6
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 9.5e-134 480.7 340 77.6
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 6.2e-133 478.0 340 77.9
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 8.1e-133 477.6 337 77.7
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 1.1e-126 457.2 344 73.8
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 5.3e-108 395.2 244 83.6
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 1.3e-106 390.6 349 62.2
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 2.1e-104 383.3 340 66.2
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 2.8e-77 293.1 358 49.2
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 2.3e-71 273.5 347 47.6
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 4.3e-70 269.2 349 48.7
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.8e-69 266.5 333 47.7
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 2.8e-69 266.5 351 45.3
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.1e-68 264.6 349 46.7
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 1.4e-68 264.2 348 46.3
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 3.1e-68 263.1 349 45.8
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 3.1e-68 263.1 353 45.6
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 4.1e-68 262.7 349 45.8
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 5.3e-68 262.3 354 45.2
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 5.3e-68 262.3 367 45.5
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 5.3e-68 262.3 327 46.8
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 2.0e-67 260.4 353 44.5
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 3.4e-67 259.6 330 48.5
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 5.9e-67 258.8 347 46.4
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 2.9e-66 256.5 350 43.4
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 3.8e-66 256.1 346 46.0
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 5.0e-66 255.8 346 46.5
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 2.5e-65 253.4 341 44.0
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 3.2e-65 253.1 349 45.6
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 3.2e-65 253.1 342 40.6
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 5.5e-65 252.3 330 42.7
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 9.4e-65 251.5 349 45.0
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.6e-64 250.8 349 43.8
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 2.1e-64 250.4 355 42.3
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 6.1e-64 248.8 348 44.0
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 6.1e-64 248.8 341 40.2
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 6.1e-64 248.8 354 44.6
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.0e-63 248.1 346 45.7
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 1.0e-63 248.1 345 45.5
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 2.3e-63 246.9 348 44.0
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 3.0e-63 246.5 345 44.1
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 5.1e-63 245.7 336 44.3
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 1.1e-62 244.6 339 44.0
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 9.7e-62 241.5 335 42.1
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 2.2e-61 240.4 347 40.6
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 2.8e-61 240.0 346 40.5
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 3.7e-61 239.6 349 43.3
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 6.3e-61 238.8 347 42.7
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 8.2e-61 238.4 344 43.9
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 5.3e-60 235.7 345 41.7
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 9.1e-60 235.0 351 38.7
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.2e-59 234.6 345 43.2
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 4.5e-59 232.6 348 42.8
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 1.3e-58 231.1 346 42.8
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 1.7e-58 230.7 347 40.6
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 6.5e-58 228.8 331 43.2
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 1.9e-57 227.3 347 42.1
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 5.5e-57 225.7 350 42.9
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 5.5e-57 225.7 368 39.1
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 5.5e-57 225.7 394 41.6
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 9.4e-57 224.9 351 39.0
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 1.6e-56 224.2 374 38.5
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 3.0e-55 219.9 349 40.7
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 8.8e-55 218.4 335 41.5
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 4.4e-54 216.1 348 41.4
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 2.2e-53 213.8 349 41.3
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 2.2e-53 213.8 348 38.8
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 1.2e-51 208.0 336 42.0
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 2.0e-51 207.2 355 36.9
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 6.5e-50 202.2 329 35.9
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 7.2e-49 198.7 333 35.1
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.2e-48 198.0 344 37.8
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 1.6e-48 197.6 312 43.6
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 3.6e-48 196.4 347 40.1
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 1.8e-47 194.1 389 37.0
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.6e-46 190.3 336 37.8
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 3.4e-46 189.9 343 39.7
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 5.7e-46 189.1 336 38.7
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.1e-44 184.9 259 45.2
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 1.4e-44 184.5 308 37.3
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 5.4e-44 182.6 193 51.3
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.2e-43 181.4 308 35.7
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 1.6e-43 181.0 362 35.1
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 2.7e-43 180.3 453 32.5
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 2.9e-42 176.8 242 42.1
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 5.0e-42 176.0 283 37.1
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 5.0e-42 176.0 338 34.9
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 8.5e-42 175.3 381 35.7
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 8.5e-42 175.3 268 44.8
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 2.5e-41 173.7 331 35.6
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 9.5e-41 171.8 327 37.9
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 1.6e-40 171.0 351 36.2
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 2.6e-38 163.7 352 32.4
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 2.2e-37 160.6 306 35.9
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 6.3e-37 159.1 196 45.4
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 1.4e-36 157.9 297 34.7
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 2.4e-36 157.1 297 35.0
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 1.6e-35 154.5 297 35.0
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 4.5e-35 152.9 268 41.4
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 4.5e-35 152.9 343 33.8
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-34 151.4 270 35.2
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 8.6e-34 148.7 99 76.8
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 8.6e-34 148.7 286 34.3
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 2.3e-31 140.6 204 37.7
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 5.2e-31 139.4 210 41.4
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.4e-28 131.3 204 41.7
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 5.8e-22 109.4 120 50.8
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 4.1e-20 103.2 215 31.2
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 1.2e-19 101.7 277 32.9
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 5.0e-18 96.3 382 25.4
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 1.5e-17 94.7 404 24.5
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 5.6e-17 92.8 263 32.7
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 5.6e-17 92.8 263 32.7
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 5.6e-17 92.8 263 32.7
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 8.1e-16 89.0 218 34.4
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 1.8e-15 87.8 243 31.7
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 5.2e-15 86.3 172 30.2
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 1.2e-14 85.1 90 47.8
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 3.4e-14 83.6 114 39.5
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 2.9e-13 80.5 119 33.6
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 2.4e-12 77.4 199 29.6
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 3.2e-12 77.0 153 32.7
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.7e-08 63.2 65 53.8
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 8.1e-08 62.4 66 48.5
SEGI_30577 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 1.1e-07 62.0 103 35.0
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 3.1e-07 60.5 45 60.0
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 4.0e-07 60.1 66 47.0


User provided reference genes

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