Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1683.7 844 100.0
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1647.1 845 97.3
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1593.6 848 94.0
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1546.6 844 91.7
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1541.6 849 91.0
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1463.4 855 86.1
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1463.4 855 86.1
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1426.8 828 87.0
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1384.4 854 82.6
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1364.7 859 80.0
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1308.9 851 77.9
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1300.8 850 77.3
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1300.4 851 77.8
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1298.5 858 76.8
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1286.2 850 75.9
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1285.0 708 89.7
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1275.8 851 75.7
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1266.5 852 75.5
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1266.5 852 75.5
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1256.1 852 75.0
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1255.7 852 75.0
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1249.2 847 75.2
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1245.3 853 74.6
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1224.2 858 70.3
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1219.1 861 70.0
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1203.7 862 70.1
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1197.6 864 70.1
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1188.7 772 77.5
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1188.7 868 68.8
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1187.9 855 69.1
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1187.2 865 69.6
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1183.3 855 68.8
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1179.5 860 69.5
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1178.3 859 70.1
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1176.4 859 70.1
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1172.1 868 68.4
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1172.1 859 69.5
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1167.5 867 68.5
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1163.7 864 67.9
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1163.3 887 67.9
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1162.9 854 69.3
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1157.9 855 68.8
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1157.1 856 68.3
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1156.0 806 71.7
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1155.2 857 67.8
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1155.2 857 67.9
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1154.8 860 68.8
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1153.7 859 68.0
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1153.3 857 67.8
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1151.3 858 67.0
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1151.0 850 67.8
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1145.6 851 69.7
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1142.9 836 68.9
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1142.5 857 67.3
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1141.7 861 67.7
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1141.3 859 67.5
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1138.6 878 66.5
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1132.1 881 65.3
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1126.3 860 67.1
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1125.5 855 66.4
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1125.2 859 67.8
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1123.6 859 68.0
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1120.9 862 66.1
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1119.4 858 67.4
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1117.8 857 66.2
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1117.4 873 65.2
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1116.3 860 66.3
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1115.9 858 66.6
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1114.4 857 66.5
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1110.1 848 67.3
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1109.4 858 66.2
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1109.4 860 66.4
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1107.4 858 66.7
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1106.7 863 66.2
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1105.5 859 65.7
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1100.5 856 65.7
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1099.7 850 65.1
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1099.7 768 71.2
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1097.8 772 71.2
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1094.3 868 64.6
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1092.0 930 62.2
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1091.6 853 66.1
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1090.1 833 67.3
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1088.9 925 61.3
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1088.6 868 64.6
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1088.6 865 65.0
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1081.6 857 64.4
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1080.1 858 64.3
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1079.7 969 60.0
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1078.5 858 64.2
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1075.5 875 64.5
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 4.0e-311 1071.2 836 64.6
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 5.2e-311 1070.8 842 66.0
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 2.5e-310 1068.5 765 70.5
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 5.7e-310 1067.4 922 61.2
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 1.1e-308 1063.1 758 70.6
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 1.5e-302 1042.7 945 59.8
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 3.4e-302 1041.6 731 71.0
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 9.8e-302 1040.0 865 63.0
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 1.6e-299 1032.7 841 64.2
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 1.7e-298 1029.2 810 65.2
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 1.8e-295 1019.2 661 77.0
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 5.2e-295 1017.7 1016 55.6
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 9.8e-294 1013.4 698 71.6
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 4.5e-291 1004.6 836 62.3
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 5.0e-290 1001.1 743 67.8
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 4.2e-289 998.0 888 59.7
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.1e-271 940.3 717 66.0
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 6.2e-264 914.4 846 56.3
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.5e-262 909.8 787 59.6
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.7e-258 896.3 609 74.1
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.5e-257 893.3 479 93.7
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 5.6e-257 891.3 836 57.4
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 7.3e-257 891.0 837 57.3
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.5e-246 856.7 741 60.3
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.6e-227 793.5 535 73.6
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 7.4e-225 784.6 462 87.0
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 2.4e-223 779.6 838 50.5
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 2.2e-221 773.1 854 51.3
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 9.0e-215 751.1 765 54.8
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 1.1e-201 707.6 539 67.9
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 7.4e-201 704.9 858 46.2
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.8e-200 703.0 871 46.7
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 5.3e-199 698.7 866 46.1
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.8e-197 692.6 371 92.2
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.8e-192 675.6 459 74.3
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 3.0e-165 586.6 544 58.1
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 9.5e-164 581.6 758 45.4
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 3.6e-163 579.7 391 73.4
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 2.4e-151 540.4 470 60.4
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 9.2e-151 538.5 492 60.2
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.6e-150 537.7 802 41.8
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.3e-149 533.9 364 77.5
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 1.5e-145 521.2 742 43.3
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.5e-140 504.6 458 58.7
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 2.4e-130 470.7 392 61.0
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 1.2e-129 468.4 460 55.0
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 3.4e-129 466.8 302 74.2
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 8.4e-120 435.6 356 62.6
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 9.6e-116 422.2 320 66.2
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 1.1e-111 408.7 313 65.2
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 1.1e-100 372.1 309 59.2
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 2.6e-81 307.8 283 54.8
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.5e-81 307.4 204 72.5
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 3.4e-68 264.2 173 70.5
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 3.2e-63 247.7 252 53.2
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 8.3e-59 233.0 186 62.4
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 1.8e-58 231.9 155 76.1
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 4.1e-50 204.1 131 75.6
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 7.0e-50 203.4 210 51.0
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 2.6e-44 184.9 490 32.4
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.1e-39 169.5 158 58.2
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 2.5e-39 168.3 121 73.6
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 9.5e-31 139.8 128 61.7
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 1.1e-29 136.3 72 94.4
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 2.9e-27 128.3 269 33.8
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.9e-26 125.6 121 57.9
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 4.0e-21 107.8 62 85.5
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 1.1e-18 99.8 58 84.5
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 2.3e-16 92.0 76 67.1
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.4e-13 82.8 105 43.8
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.8e-13 82.4 79 53.2
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 6.9e-13 80.5 90 50.0
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 3.5e-09 68.2 40 82.5
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 7.9e-09 67.0 35 88.6
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 7.9e-09 67.0 35 88.6
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 7.9e-09 67.0 35 88.6
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 5.6e-07 60.8 44 68.2
C06p52200 Brassica napus HOM05D002643 ORTHO05D002984 2.1e-06 58.9 52 63.5
AL6G39020 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 6.2e-06 57.4 35 80.0


User provided reference genes

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