Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G21820 Arabidopsis lyrata HOM05D004904 ORTHO05D021430 5.1e-72 274.2 132 100.0
AT3G10455 Arabidopsis thaliana HOM05D004904 ORTHO05D021430 4.8e-62 241.1 132 87.9
Carub.0003s0967 Capsella rubella HOM05D004904 ORTHO05D021430 3.8e-51 204.9 132 72.7
Thhalv10005700m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 3.8e-19 98.6 133 39.1
C09p50630 Brassica napus HOM05D004904 ORTHO05D010762 1.4e-18 96.7 133 40.6
BolC9t57916H Brassica oleracea HOM05D004904 ORTHO05D010762 1.4e-18 96.7 133 40.6
CARHR102930 Cardamine hirsuta HOM05D004904 ORTHO05D012993 1.4e-18 96.7 149 41.6
Thhalv10005113m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 9.4e-18 94.0 133 34.6
CARHR216070 Cardamine hirsuta HOM05D004904 ORTHO05D010762 1.2e-17 93.6 124 38.7
BcaNung01392 Brassica carinata HOM05D004904 ORTHO05D010762 3.6e-17 92.0 119 41.2
A02p42370 Brassica napus HOM05D004904 ORTHO05D010762 3.6e-17 92.0 120 38.3
BraA02t09168Z Brassica rapa HOM05D004904 ORTHO05D010762 3.6e-17 92.0 120 38.3
CARHR057800 Cardamine hirsuta HOM05D004904 ORTHO05D010762 4.7e-17 91.7 122 39.3
Thhalv10005414m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 6.1e-17 91.3 118 39.8
A10p15680 Brassica napus HOM05D004904 ORTHO05D010762 8.0e-17 90.9 133 38.3
BraA10t43666Z Brassica rapa HOM05D004904 ORTHO05D010762 8.0e-17 90.9 133 38.3
Carub.0002s1683 Capsella rubella HOM05D004904 ORTHO05D012993 8.0e-17 90.9 136 40.4
BolC2t12283H Brassica oleracea HOM05D004904 ORTHO05D010762 1.0e-16 90.5 120 36.7
A09p07760 Brassica napus HOM05D004904 ORTHO05D010762 1.8e-16 89.7 133 39.1
BraA09t36424Z Brassica rapa HOM05D004904 ORTHO05D010762 1.8e-16 89.7 133 39.1
BcaC04g23406 Brassica carinata HOM05D004904 ORTHO05D010762 2.3e-16 89.4 133 39.1
A03p28810 Brassica napus HOM05D004904 ORTHO05D002833 2.3e-16 89.4 127 40.9
BcaC04g23408 Brassica carinata HOM05D004904 ORTHO05D010762 3.0e-16 89.0 133 36.1
C09p08630 Brassica napus HOM05D004904 ORTHO05D010762 3.0e-16 89.0 133 36.1
BolC2t07254H Brassica oleracea HOM05D004904 ORTHO05D012993 3.0e-16 89.0 122 41.0
BolC3t15792H Brassica oleracea HOM05D004904 ORTHO05D002833 3.0e-16 89.0 127 40.2
BolC9t53774H Brassica oleracea HOM05D004904 ORTHO05D010762 3.0e-16 89.0 133 36.1
BolC9t53777H Brassica oleracea HOM05D004904 ORTHO05D010762 3.0e-16 89.0 133 39.1
CARHR216110 Cardamine hirsuta HOM05D004904 ORTHO05D010762 3.0e-16 89.0 122 37.7
AL2G29420 Arabidopsis lyrata HOM05D004904 ORTHO05D012993 3.9e-16 88.6 145 39.3
C09p08660 Brassica napus HOM05D004904 ORTHO05D010762 3.9e-16 88.6 132 36.4
Carub.0007s3223 Capsella rubella HOM05D004904 ORTHO05D010762 5.2e-16 88.2 123 35.8
AT5G39493 Arabidopsis thaliana HOM05D004904 ORTHO05D010762 8.8e-16 87.4 131 34.4
A06p47670 Brassica napus HOM05D004904 ORTHO05D002833 8.8e-16 87.4 128 40.6
BraA06t27634Z Brassica rapa HOM05D004904 ORTHO05D002833 8.8e-16 87.4 128 40.6
A01p24640 Brassica napus HOM05D004904 ORTHO05D002833 1.1e-15 87.0 128 40.6
Carub.0007s2936 Capsella rubella HOM05D004904 ORTHO05D010762 1.1e-15 87.0 131 32.8
Carub.0007s3224 Capsella rubella HOM05D004904 ORTHO05D010762 1.5e-15 86.7 123 35.0
Thhalv10014983m.g Eutrema salsugineum HOM05D004904 ORTHO05D012993 1.5e-15 86.7 148 37.2
A05p38710 Brassica napus HOM05D063262 ORTHO05D021430 2.0e-15 86.3 70 58.6
BraA05t22662Z Brassica rapa HOM05D063262 ORTHO05D021430 2.0e-15 86.3 70 58.6
BraA09t36421Z Brassica rapa HOM05D004904 ORTHO05D010762 2.6e-15 85.9 133 35.3
CARHR274150 Cardamine hirsuta HOM05D004904 ORTHO05D012993 2.6e-15 85.9 150 38.0
A09p07710 Brassica napus HOM05D004904 ORTHO05D010762 3.3e-15 85.5 133 35.3
CARHR112870 Cardamine hirsuta HOM05D004904 ORTHO05D010762 3.3e-15 85.5 124 33.9
Aa31LG3G3060 Aethionema arabicum HOM05D004904 ORTHO05D002833 4.4e-15 85.1 126 37.3
CARHR220080 Cardamine hirsuta HOM05D004904 ORTHO05D012458 5.7e-15 84.7 120 35.0
Thhalv10015293m.g Eutrema salsugineum HOM05D004904 ORTHO05D015396 5.7e-15 84.7 135 38.5
Aa31LG3G3090 Aethionema arabicum HOM05D004904 ORTHO05D002833 7.4e-15 84.3 133 39.1
BcaB06g25859 Brassica carinata HOM05D004904 ORTHO05D010762 7.4e-15 84.3 122 39.3
C09p08640 Brassica napus HOM05D004904 ORTHO05D010762 7.4e-15 84.3 120 39.2
BolC9t53775H Brassica oleracea HOM05D004904 ORTHO05D010762 7.4e-15 84.3 120 39.2
Carub.0007s2927 Capsella rubella HOM05D004904 ORTHO05D010762 7.4e-15 84.3 141 34.8
Carub.0007s2940 Capsella rubella HOM05D004904 ORTHO05D010762 9.7e-15 84.0 135 34.1
Thhalv10029361m.g Eutrema salsugineum HOM05D004904 ORTHO05D002833 9.7e-15 84.0 125 39.2
A09p07740 Brassica napus HOM05D004904 ORTHO05D010762 1.3e-14 83.6 133 35.3
CARHR216060 Cardamine hirsuta HOM05D004904 ORTHO05D010762 1.3e-14 83.6 122 36.1
C03p34820 Brassica napus HOM05D000042 ORTHO05D000028 4.8e-14 81.6 121 36.4
Carub.0002s0376 Capsella rubella HOM05D004904 ORTHO05D015396 6.3e-14 81.3 131 35.9
BcaNung04925 Brassica carinata HOM05D000058 ORTHO05D000255 8.2e-14 80.9 65 58.5
A09p07720 Brassica napus HOM05D004904 ORTHO05D010762 8.2e-14 80.9 120 37.5
Carub.0007s2938 Capsella rubella HOM05D004904 ORTHO05D010762 8.2e-14 80.9 140 33.6
AT1G09245 Arabidopsis thaliana HOM05D004904 ORTHO05D015396 1.1e-13 80.5 128 33.6
BcaB01g02770 Brassica carinata HOM05D004904 ORTHO05D002833 1.1e-13 80.5 123 39.0
C07p26380 Brassica napus HOM05D004904 ORTHO05D002833 1.1e-13 80.5 128 39.1
BolC7t43165H Brassica oleracea HOM05D004904 ORTHO05D002833 1.1e-13 80.5 128 39.1
BraA09t36422Z Brassica rapa HOM05D004904 ORTHO05D010762 1.1e-13 80.5 120 37.5
Carub.0007s2993 Capsella rubella HOM05D004904 ORTHO05D012993 1.1e-13 80.5 127 38.6
Carub.0007s2995 Capsella rubella HOM05D004904 ORTHO05D012993 1.1e-13 80.5 127 38.6
CARHR102030 Cardamine hirsuta HOM05D004904 ORTHO05D012610 1.1e-13 80.5 121 38.0
Aa31LG11G9250 Aethionema arabicum HOM05D004904 ORTHO05D002833 1.4e-13 80.1 124 38.7
C03p34800 Brassica napus HOM05D004904 ORTHO05D002833 1.8e-13 79.7 134 38.8
BolC7t43818H Brassica oleracea HOM05D012418 ORTHO05D012993 2.4e-13 79.3 123 37.4
Carub.0003s0968 Capsella rubella HOM05D003012 ORTHO05D002833 2.4e-13 79.3 131 37.4
AL7G45630 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 3.1e-13 79.0 133 32.3
BraA03t12077Z Brassica rapa HOM05D004904 ORTHO05D002833 4.1e-13 78.6 127 34.6
BcaC01g04697 Brassica carinata HOM05D004904 ORTHO05D002833 5.3e-13 78.2 117 36.8
CARHR102040 Cardamine hirsuta HOM05D004904 ORTHO05D012610 5.3e-13 78.2 124 38.7
AL7G45640 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 7.0e-13 77.8 113 34.5
A03p28790 Brassica napus HOM05D004904 ORTHO05D002833 7.0e-13 77.8 123 39.0
BraA02t05719Z Brassica rapa HOM05D012418 ORTHO05D043249 7.0e-13 77.8 134 36.6
BraA03t12076Z Brassica rapa HOM05D004904 ORTHO05D002833 7.0e-13 77.8 123 39.0
A04p21020 Brassica napus HOM05D003012 ORTHO05D002833 9.1e-13 77.4 127 40.2
BraA04t17670Z Brassica rapa HOM05D003012 ORTHO05D002833 9.1e-13 77.4 127 40.2
BraA09t41444Z Brassica rapa HOM05D004904 ORTHO05D012458 1.2e-12 77.0 121 35.5
C08p44250 Brassica napus HOM05D004904 ORTHO05D012458 1.6e-12 76.6 119 36.1
BraA04t16123Z Brassica rapa HOM05D004904 ORTHO05D012458 1.6e-12 76.6 121 33.1
Sp5g23990 Schrenkiella parvula HOM05D004904 ORTHO05D021430 2.0e-12 76.3 129 37.2
BcaC08g44379 Brassica carinata HOM05D003012 ORTHO05D002833 2.6e-12 75.9 131 33.6
C06p18130 Brassica napus HOM05D003012 ORTHO05D002833 2.6e-12 75.9 131 33.6
BolC2t09634H Brassica oleracea HOM05D011693 ORTHO05D017562 2.6e-12 75.9 143 30.1
BolC6t37021H Brassica oleracea HOM05D003012 ORTHO05D002833 2.6e-12 75.9 131 33.6
BraA07t29670Z Brassica rapa HOM05D003012 ORTHO05D002833 2.6e-12 75.9 131 33.6
BolC2t07250H Brassica oleracea HOM05D012418 ORTHO05D043249 3.5e-12 75.5 134 36.6
BraA06t27252Z Brassica rapa HOM05D012418 ORTHO05D012993 3.5e-12 75.5 123 35.8
BraA10t43201Z Brassica rapa HOM05D012418 ORTHO05D012993 3.5e-12 75.5 154 36.4
C04p56810 Brassica napus HOM05D003012 ORTHO05D002833 4.5e-12 75.1 127 39.4
BolC4t27213H Brassica oleracea HOM05D003012 ORTHO05D002833 4.5e-12 75.1 127 39.4
C09p67280 Brassica napus HOM05D003012 ORTHO05D002833 5.9e-12 74.7 127 38.6
A02p22580 Brassica napus HOM05D011693 ORTHO05D017562 1.0e-11 73.9 143 30.8
BolC4t25152H Brassica oleracea HOM05D004904 ORTHO05D012458 1.0e-11 73.9 121 32.2
BraA02t07262Z Brassica rapa HOM05D011693 ORTHO05D017562 1.0e-11 73.9 143 30.8
A03p28800 Brassica napus HOM05D000042 ORTHO05D000028 1.3e-11 73.6 121 31.4
BraA02t05833Z Brassica rapa HOM05D012090 ORTHO05D012993 1.7e-11 73.2 122 41.0
A04p29720 Brassica napus HOM05D003012 ORTHO05D002833 2.2e-11 72.8 135 34.8
Carub.0003s2589 Capsella rubella HOM05D004904 ORTHO05D012610 2.2e-11 72.8 122 37.7
CARHR041320 Cardamine hirsuta HOM05D004904 ORTHO05D012458 2.2e-11 72.8 131 35.9
BraA04t18436Z Brassica rapa HOM05D003012 ORTHO05D002833 2.9e-11 72.4 135 34.8
AT1G51250 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 3.8e-11 72.0 124 33.9
A03p28780 Brassica napus HOM05D004904 ORTHO05D002833 3.8e-11 72.0 123 38.2
A02p22560 Brassica napus HOM05D011693 ORTHO05D017562 5.0e-11 71.6 143 28.7
C08p44310 Brassica napus HOM05D004904 ORTHO05D012458 5.0e-11 71.6 134 35.1
BolC8t51974H Brassica oleracea HOM05D004904 ORTHO05D012458 5.0e-11 71.6 134 35.1
BraA02t07261Z Brassica rapa HOM05D011693 ORTHO05D017562 5.0e-11 71.6 143 28.7
BraA09t41446Z Brassica rapa HOM05D004904 ORTHO05D012458 5.0e-11 71.6 120 35.8
Aa31LG3G3080 Aethionema arabicum HOM05D004904 ORTHO05D002833 6.5e-11 71.2 125 34.4
C02p36240 Brassica napus HOM05D011693 ORTHO05D017562 6.5e-11 71.2 143 29.4
BolC2t09637H Brassica oleracea HOM05D011693 ORTHO05D017562 6.5e-11 71.2 143 29.4
Thhalv10002725m.g Eutrema salsugineum HOM05D004904 ORTHO05D010762 6.5e-11 71.2 119 32.8
CARHR084960 Cardamine hirsuta HOM05D003012 ORTHO05D002833 8.5e-11 70.9 134 35.1
Sp6g07620 Schrenkiella parvula HOM05D004904 ORTHO05D002833 8.5e-11 70.9 130 38.5
AT1G51240 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 1.1e-10 70.5 124 35.5
Carub.0001s4015 Capsella rubella HOM05D004904 ORTHO05D012458 1.5e-10 70.1 126 32.5
BraA02t08507Z Brassica rapa HOM05D012418 ORTHO05D012993 1.9e-10 69.7 140 35.7
A07p19700 Brassica napus HOM05D003012 ORTHO05D002833 2.5e-10 69.3 129 31.0
Thhalv10029254m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 2.5e-10 69.3 134 33.6
Aa31LG3G3310 Aethionema arabicum HOM05D003012 ORTHO05D002833 5.5e-10 68.2 97 37.1
Carub.0001s4014 Capsella rubella HOM05D004904 ORTHO05D012458 5.5e-10 68.2 126 32.5
Thhalv10028054m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 5.5e-10 68.2 133 32.3
AL3G46890 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 7.2e-10 67.8 121 36.4
AL1G57680 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 9.4e-10 67.4 123 34.1
AT2G04115 Arabidopsis thaliana HOM05D004904 ORTHO05D012610 9.4e-10 67.4 121 34.7
BolC2t11434H Brassica oleracea HOM05D012418 ORTHO05D012993 1.2e-09 67.0 132 37.1
BolC4t27745H Brassica oleracea HOM05D003012 ORTHO05D002833 1.2e-09 67.0 130 32.3
A03p57360 Brassica napus HOM05D003012 ORTHO05D002833 1.6e-09 66.6 133 30.8
BraA03t14802Z Brassica rapa HOM05D003012 ORTHO05D002833 1.6e-09 66.6 133 30.8
Aa31LG3G3280 Aethionema arabicum HOM05D003012 ORTHO05D002833 2.1e-09 66.2 119 35.3
BcaB06g27716 Brassica carinata HOM05D003012 ORTHO05D002833 2.1e-09 66.2 133 32.3
C09p08620 Brassica napus HOM05D004904 ORTHO05D010762 2.1e-09 66.2 103 35.9
BraA08t34771Z Brassica rapa HOM05D020991 ORTHO05D018426 2.1e-09 66.2 138 35.5
CARHR291870 Cardamine hirsuta HOM05D003012 ORTHO05D002833 2.1e-09 66.2 140 32.9
AL6G36930 Arabidopsis lyrata HOM05D004904 ORTHO05D010762 2.7e-09 65.9 112 34.8
BcaB05g22511 Brassica carinata HOM05D012418 ORTHO05D012993 3.6e-09 65.5 141 34.8
AL1G59040 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 4.7e-09 65.1 110 35.5
AL7G52140 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 4.7e-09 65.1 133 33.1
BcaB02g08008 Brassica carinata HOM05D003012 ORTHO05D002833 6.1e-09 64.7 133 31.6
A01p29940 Brassica napus HOM05D003012 ORTHO05D002833 6.1e-09 64.7 134 32.8
BraA01t03124Z Brassica rapa HOM05D003012 ORTHO05D002833 6.1e-09 64.7 134 32.8
Aa31LG3G3260 Aethionema arabicum HOM05D003012 ORTHO05D002833 8.0e-09 64.3 125 32.0
AL1G59050 Arabidopsis lyrata HOM05D004904 ORTHO05D012458 8.0e-09 64.3 110 34.5
BcaC07g41901 Brassica carinata HOM05D004904 ORTHO05D015396 8.0e-09 64.3 135 34.1
BcaC07g41902 Brassica carinata HOM05D004904 ORTHO05D015396 8.0e-09 64.3 135 34.1
C04p39290 Brassica napus HOM05D012418 ORTHO05D012993 8.0e-09 64.3 121 36.4
C08p49560 Brassica napus HOM05D004904 ORTHO05D015396 8.0e-09 64.3 135 34.1
BolC8t52492H Brassica oleracea HOM05D004904 ORTHO05D015396 8.0e-09 64.3 135 34.1
CARHR219950 Cardamine hirsuta HOM05D004904 ORTHO05D010762 8.0e-09 64.3 96 33.3
Thhalv10023818m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 8.0e-09 64.3 102 35.3
BcaC02g08873 Brassica carinata HOM05D003012 ORTHO05D002833 1.0e-08 63.9 133 31.6
A04p15380 Brassica napus HOM05D003012 ORTHO05D002833 1.0e-08 63.9 133 31.6
C04p49610 Brassica napus HOM05D003012 ORTHO05D002833 1.0e-08 63.9 133 31.6
BolC4t26548H Brassica oleracea HOM05D003012 ORTHO05D002833 1.0e-08 63.9 133 31.6
BraA04t17178Z Brassica rapa HOM05D003012 ORTHO05D002833 1.0e-08 63.9 133 31.6
AT2G23142 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 1.4e-08 63.5 137 31.4
AT5G38440 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 1.4e-08 63.5 135 30.4
Carub.0001s3274 Capsella rubella HOM05D003012 ORTHO05D002833 1.4e-08 63.5 132 32.6
AL3G46880 Arabidopsis lyrata HOM05D004904 ORTHO05D080488 1.8e-08 63.2 124 33.9
C01p37850 Brassica napus HOM05D003012 ORTHO05D002833 1.8e-08 63.2 134 31.3
BolC1t03746H Brassica oleracea HOM05D003012 ORTHO05D002833 1.8e-08 63.2 134 31.3
A03p36000 Brassica napus HOM05D020264 ORTHO05D033075 2.3e-08 62.8 118 31.4
BolC9t57244H Brassica oleracea HOM05D012418 ORTHO05D012993 2.3e-08 62.8 96 40.6
BraA03t12772Z Brassica rapa HOM05D020264 ORTHO05D033075 2.3e-08 62.8 118 31.4
AT5G38435 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 3.0e-08 62.4 133 32.3
BolC8t51971H Brassica oleracea HOM05D004904 ORTHO05D012458 3.0e-08 62.4 105 32.4
Carub.0007s3746 Capsella rubella HOM05D003012 ORTHO05D002833 3.0e-08 62.4 140 29.3
BraA09t41901Z Brassica rapa HOM05D004904 ORTHO05D015396 4.0e-08 62.0 136 33.8
Carub.0007s3747 Capsella rubella HOM05D003012 ORTHO05D002833 4.0e-08 62.0 135 31.1
C04p62640 Brassica napus HOM05D003012 ORTHO05D002833 5.2e-08 61.6 129 32.6
BolC3t16633H Brassica oleracea HOM05D020264 ORTHO05D033075 5.2e-08 61.6 118 33.1
C04p62630 Brassica napus HOM05D003012 ORTHO05D002833 8.8e-08 60.8 134 33.6
Thhalv10029524m.g Eutrema salsugineum HOM05D004904 ORTHO05D012610 8.8e-08 60.8 121 35.5
Sp7g03610 Schrenkiella parvula HOM05D003012 ORTHO05D002833 8.8e-08 60.8 132 29.5
A04p25490 Brassica napus HOM05D003012 ORTHO05D002833 1.5e-07 60.1 134 33.6
BraA04t18052Z Brassica rapa HOM05D003012 ORTHO05D002833 1.5e-07 60.1 134 33.6
Aa31LG3G3320 Aethionema arabicum HOM05D003012 ORTHO05D002833 2.0e-07 59.7 135 31.1
Carub.0001s3122 Capsella rubella HOM05D004904 ORTHO05D018426 5.7e-07 58.2 124 33.9
BcaC09g49331 Brassica carinata HOM05D003012 ORTHO05D002833 7.5e-07 57.8 130 31.5
AL4G13000 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 9.7e-07 57.4 115 30.4
BcaNung01393 Brassica carinata HOM05D004904 ORTHO05D010762 4.8e-06 55.1 78 37.2
AT1G51230 Arabidopsis thaliana HOM05D004904 ORTHO05D012458 6.3e-06 54.7 112 30.4
Aa31LG3G3290 Aethionema arabicum HOM05D003012 ORTHO05D002833 8.2e-06 54.3 119 31.9


User provided reference genes

Program Settings