Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 7.1e-116 420.6 213 100.0
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 2.8e-104 382.1 213 91.5
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 4.9e-101 371.3 213 91.5
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 3.5e-99 365.2 213 89.7
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 1.7e-93 346.3 218 84.4
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 7.6e-86 320.9 206 81.6
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 2.2e-85 319.3 217 80.6
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 1.1e-84 317.0 214 79.0
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 1.3e-82 310.1 206 80.6
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 5.1e-82 308.1 213 77.5
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 3.3e-81 305.4 205 79.5
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 1.5e-73 280.0 213 74.2
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 4.2e-60 235.3 179 66.5
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 5.5e-60 235.0 157 72.0
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 1.2e-59 233.8 198 62.6
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 1.2e-59 233.8 205 61.0
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 1.6e-59 233.4 166 68.7
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 2.1e-59 233.0 172 66.3
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 2.7e-59 232.6 210 59.5
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 3.6e-59 232.3 179 66.5
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 3.6e-59 232.3 231 58.4
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 4.7e-59 231.9 148 74.3
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 1.4e-58 230.3 165 67.3
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.3e-58 229.6 163 66.9
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 5.1e-58 228.4 155 71.6
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 6.7e-58 228.0 163 66.9
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 8.8e-58 227.6 155 71.0
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 8.8e-58 227.6 195 62.6
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 1.5e-57 226.9 165 66.1
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 2.6e-57 226.1 162 67.9
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 2.6e-57 226.1 161 67.7
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 4.4e-57 225.3 193 61.1
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 5.7e-57 224.9 208 57.7
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 5.7e-57 224.9 179 62.6
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 9.7e-57 224.2 177 62.1
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 9.7e-57 224.2 202 59.4
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 9.7e-57 224.2 197 61.4
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 1.3e-56 223.8 160 68.8
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 1.7e-56 223.4 177 62.7
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 1.7e-56 223.4 148 70.3
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 4.8e-56 221.9 162 67.3
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 6.3e-56 221.5 149 70.5
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 6.3e-56 221.5 149 70.5
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 8.2e-56 221.1 170 66.5
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 8.2e-56 221.1 169 65.1
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 8.2e-56 221.1 161 66.5
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 8.2e-56 221.1 213 55.4
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 1.1e-55 220.7 148 70.9
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 1.1e-55 220.7 164 64.0
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 1.1e-55 220.7 157 67.5
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 1.4e-55 220.3 148 70.3
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.8e-55 219.9 171 60.8
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 2.4e-55 219.5 212 55.2
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 5.3e-55 218.4 210 54.8
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 5.3e-55 218.4 150 67.3
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 9.1e-55 217.6 149 70.5
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 1.6e-54 216.9 148 68.2
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 1.6e-54 216.9 150 66.7
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 3.5e-54 215.7 150 64.0
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 4.5e-54 215.3 205 56.6
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 5.9e-54 214.9 151 69.5
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 7.7e-54 214.5 169 62.7
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 2.2e-53 213.0 142 68.3
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 5.0e-53 211.8 170 59.4
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 5.0e-53 211.8 148 65.5
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 8.5e-53 211.1 212 52.8
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 1.1e-52 210.7 184 54.3
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 1.5e-52 210.3 165 62.4
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 1.9e-52 209.9 210 56.7
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 4.2e-52 208.8 149 64.4
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 4.2e-52 208.8 150 63.3
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 7.2e-52 208.0 171 60.2
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.0e-50 204.1 150 65.3
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 1.0e-50 204.1 148 63.5
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.0e-50 202.6 150 64.7
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.0e-50 202.6 150 64.7
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 6.7e-50 201.4 150 64.0
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.1e-49 200.7 150 64.0
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 2.0e-49 199.9 150 63.3
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 2.0e-49 199.9 132 70.5
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 9.7e-49 197.6 137 63.5
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 1.7e-48 196.8 147 61.9
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 5.3e-47 191.8 153 60.8
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 3.8e-45 185.7 167 55.1
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 1.2e-43 180.6 219 49.3
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 1.4e-42 177.2 147 57.8
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 1.4e-42 177.2 147 57.8
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 1.8e-42 176.8 163 57.7
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 1.2e-41 174.1 150 60.7
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 4.8e-40 168.7 142 60.6
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 1.2e-38 164.1 117 63.2
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 7.7e-38 161.4 147 53.1
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 2.5e-36 156.4 139 56.8
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 1.2e-35 154.1 90 81.1
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 2.7e-35 152.9 174 48.9
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 2.0e-30 136.7 144 47.2
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 3.0e-26 122.9 180 37.2
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 4.4e-25 119.0 113 52.2
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 1.3e-21 107.5 184 34.8
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 5.0e-21 105.5 62 80.6
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 2.8e-19 99.8 92 52.2
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 1.9e-15 87.0 147 31.3
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 8.1e-11 71.6 122 29.5
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 8.1e-11 71.6 152 32.2
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 3.1e-10 69.7 51 66.7
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 5.2e-10 68.9 137 29.9
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 7.5e-09 65.1 49 65.3
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.2e-08 63.5 39 71.8
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.1e-07 61.2 60 50.0
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 5.4e-07 58.9 39 69.2
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 7.1e-07 58.5 42 54.8
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.6e-06 57.4 62 41.9


User provided reference genes

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