Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 2000.7 1054 100.0
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1975.7 1054 97.5
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1946.4 1055 95.9
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1913.7 1056 93.9
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1893.6 1055 93.8
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1878.2 1057 92.6
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1870.1 1062 92.5
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1862.4 1072 90.1
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1862.0 1072 90.1
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1843.2 1055 91.2
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1838.5 1089 88.1
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1838.2 1089 88.1
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1823.1 1074 88.2
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1815.4 1042 90.5
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1796.6 1074 87.2
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1795.8 1056 89.6
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1773.1 1041 88.4
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1768.4 1074 86.2
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1742.6 1074 85.2
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1726.5 1057 84.4
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1709.9 1062 85.2
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1529.6 1067 74.4
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1525.8 1086 73.2
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1523.1 1066 74.1
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1513.0 1077 73.8
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1512.7 1077 72.7
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1512.3 1070 73.8
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1510.4 1076 73.1
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1506.1 1070 73.0
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1503.8 1070 72.6
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1499.2 1080 71.9
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1498.8 1076 71.9
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1490.3 1079 71.7
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1488.4 1069 72.9
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1486.9 1071 72.0
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1486.9 1077 72.1
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1483.0 1071 72.7
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1481.1 1071 72.4
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1479.9 1074 71.2
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1478.0 1083 72.1
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1478.0 1067 71.5
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1475.7 1070 72.5
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1469.5 1069 71.1
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1469.1 1072 71.0
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1466.4 1071 71.5
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1464.5 1068 71.9
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1459.9 1079 70.1
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1458.4 1064 72.2
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1457.2 1077 71.4
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1457.2 1071 71.6
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1456.8 1080 70.3
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1456.8 1072 70.6
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1453.7 1071 70.7
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1452.2 1041 72.8
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1451.0 1024 73.8
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1450.6 1071 71.2
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1449.9 1071 70.7
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1449.9 1071 70.8
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1441.0 1066 70.6
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1440.6 1063 70.7
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1439.1 1066 70.6
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1439.1 1064 71.1
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1438.7 1063 70.6
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1430.2 1071 69.2
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1426.8 1077 69.5
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1426.4 1080 68.8
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1420.6 1071 69.1
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1407.9 1144 66.4
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1392.5 1077 67.8
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1388.6 1078 67.3
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1382.9 1062 69.3
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1382.5 1076 67.8
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1377.8 1108 66.9
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1377.1 1093 66.5
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1364.7 1081 66.8
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1337.0 1067 66.4
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1323.1 1093 64.9
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1316.2 1177 62.8
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1315.1 1065 65.2
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1307.4 987 70.1
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1303.9 1066 64.9
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1302.0 1127 64.8
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1292.3 1067 64.6
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1283.5 1072 63.6
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1280.0 1083 64.0
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1279.2 1068 64.8
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1279.2 1002 68.4
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1272.7 1106 62.8
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1269.2 946 70.0
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1263.1 1152 61.9
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1251.1 1101 62.0
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1230.3 1096 60.5
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1227.2 1042 63.9
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1223.0 1069 60.0
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1221.1 1170 59.8
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1216.1 1067 61.9
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1205.7 1066 59.7
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1196.8 1059 61.8
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1195.3 1069 58.9
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1194.9 1064 61.9
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1181.4 1020 61.9
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1177.5 1053 62.4
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1113.6 1068 58.8
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1109.0 864 67.5
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1103.6 1250 52.4
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 4.0e-305 1051.6 738 73.6
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 5.8e-304 1047.7 908 61.8
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 4.2e-294 1015.0 902 62.1
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 3.1e-281 972.2 539 92.2
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 5.3e-273 944.9 1081 49.2
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 3.5e-272 942.2 726 69.6
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.9e-270 936.4 1097 47.6
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 6.7e-268 927.9 968 56.1
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.6e-253 880.2 1085 46.1
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.8e-249 866.7 826 59.0
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.3e-247 860.5 628 72.8
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 2.9e-242 842.8 1047 46.2
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 3.6e-237 825.9 1079 44.3
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 3.6e-221 772.7 417 95.0
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.0e-215 754.6 774 57.2
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 3.6e-205 719.5 570 67.9
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.8e-204 717.2 548 69.3
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 4.5e-203 712.6 515 71.5
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 6.4e-194 682.2 543 67.0
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 4.5e-187 659.4 702 53.4
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 2.9e-178 630.2 1228 34.5
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.5e-177 627.1 520 65.4
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 1.7e-170 604.4 808 44.7
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.0e-167 593.6 827 45.9
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 1.8e-156 557.8 385 74.5
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.7e-141 508.1 373 72.9
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 2.8e-128 464.2 346 69.7
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 1.2e-118 432.2 359 65.5
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 1.7e-117 428.3 320 72.2
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 6.2e-112 409.8 387 56.3
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 3.1e-111 407.5 328 66.5
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.5e-110 405.2 366 61.5
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 3.8e-101 374.0 275 69.5
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.9e-100 371.7 270 73.7
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 8.7e-90 336.3 363 52.3
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 1.9e-89 335.1 178 94.9
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 1.4e-79 302.4 228 67.1
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 7.4e-65 253.4 175 74.3
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 1.8e-58 232.3 143 78.3
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.4e-55 221.9 162 64.8
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 4.2e-52 211.1 139 74.1
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 1.0e-50 206.5 129 80.6
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 6.7e-50 203.8 103 99.0
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 9.7e-49 199.9 139 69.8
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.5e-46 191.4 108 87.0
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 2.0e-38 165.6 114 71.1
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 8.8e-34 150.2 85 83.5
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 2.8e-32 145.2 111 64.9
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 3.1e-31 141.7 87 74.7
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 5.3e-31 141.0 86 74.4
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 1.0e-29 136.7 176 48.9
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 5.0e-29 134.4 80 78.8
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 1.6e-27 129.4 203 33.5
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 1.4e-26 126.3 111 62.2
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 2.3e-26 125.6 168 45.8
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-26 124.8 92 68.5
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 8.8e-26 123.6 79 69.6
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 8.8e-26 123.6 79 73.4
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.3e-24 119.8 98 64.3
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.7e-22 112.1 87 69.0
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 8.9e-18 97.1 81 56.8
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 2.0e-17 95.9 100 52.0
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 1.3e-16 93.2 82 58.5
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 1.3e-16 93.2 82 58.5
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.6e-13 80.9 61 63.9
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 6.6e-13 80.9 61 63.9
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 3.3e-12 78.6 53 79.2
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 9.5e-12 77.0 49 73.5
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.8e-10 72.8 71 52.1
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 4.0e-10 71.6 58 62.1
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 1.2e-09 70.1 48 72.9
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.7e-08 66.2 47 61.7


User provided reference genes

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