Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 3.4e-278 961.1 492 100.0
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 3.6e-232 808.1 483 88.2
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 6.4e-221 770.8 492 82.9
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 2.4e-215 752.3 495 81.0
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 6.9e-215 750.7 492 80.1
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 6.9e-215 750.7 495 81.0
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 1.5e-214 749.6 495 80.6
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 3.4e-214 748.4 495 80.2
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 7.6e-214 747.3 493 80.3
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 7.6e-214 747.3 492 80.3
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 3.8e-213 745.0 492 80.1
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 6.7e-210 734.2 492 77.8
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 4.8e-208 728.0 493 78.5
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 3.4e-206 721.8 495 77.8
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 2.2e-200 702.6 595 66.7
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 8.2e-200 700.7 610 65.2
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 1.2e-190 670.2 492 73.4
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.5e-190 669.8 485 71.3
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 4.5e-190 668.3 491 70.9
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 8.5e-189 664.1 484 71.9
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 1.9e-188 662.9 487 69.4
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.9e-188 662.9 479 72.2
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 4.2e-188 661.8 477 71.7
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 1.4e-186 656.8 482 71.6
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.4e-186 656.8 483 69.6
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 3.0e-186 655.6 491 70.3
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 8.8e-186 654.1 491 69.5
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 2.0e-185 652.9 487 69.8
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 5.7e-185 651.4 483 69.6
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 2.2e-184 649.4 490 68.6
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 5.3e-183 644.8 486 69.1
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 3.5e-182 642.1 483 68.9
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 7.7e-182 641.0 491 67.8
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 2.2e-181 639.4 488 67.6
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 2.9e-181 639.0 488 68.9
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 3.2e-180 635.6 491 66.4
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 4.2e-180 635.2 491 66.4
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 9.4e-180 634.0 483 68.7
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.2e-179 633.6 488 66.8
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 2.7e-179 632.5 477 68.6
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 2.7e-179 632.5 478 70.3
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 3.6e-179 632.1 488 66.6
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 6.1e-179 631.3 491 65.8
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 1.8e-178 629.8 491 66.4
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 1.8e-178 629.8 489 66.7
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 2.3e-178 629.4 554 61.0
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 3.0e-178 629.0 501 65.5
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 8.8e-178 627.5 484 68.0
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.1e-177 627.1 474 69.2
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 7.4e-177 624.4 510 64.7
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.7e-176 623.2 485 67.6
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 1.8e-175 619.8 486 66.7
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 3.1e-175 619.0 477 66.9
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 5.3e-175 618.2 477 66.7
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 3.5e-174 615.5 483 65.6
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 1.5e-172 610.1 480 65.6
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 9.4e-172 607.4 481 65.5
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 4.0e-170 602.1 480 65.0
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 7.5e-169 597.8 476 65.8
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 1.0e-165 587.4 480 64.4
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 6.5e-165 584.7 480 64.0
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 8.5e-165 584.3 440 68.6
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 8.8e-162 574.3 458 65.5
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 1.2e-161 573.9 408 72.1
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.7e-161 571.6 479 64.1
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.7e-161 571.6 425 68.9
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 2.2e-160 569.7 420 71.2
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.4e-159 566.2 491 63.5
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 9.1e-159 564.3 542 56.6
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 9.1e-159 564.3 484 62.4
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 2.7e-158 562.8 492 62.4
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 1.9e-156 556.6 488 62.9
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 1.6e-155 553.5 494 57.7
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 2.8e-155 552.7 416 69.0
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 6.1e-155 551.6 487 62.4
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 4.4e-153 545.4 410 69.0
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.4e-153 545.4 503 60.8
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.2e-150 537.3 498 59.2
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 3.5e-150 535.8 421 66.5
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 1.7e-149 533.5 486 59.7
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 2.2e-144 516.5 446 66.1
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 2.2e-144 516.5 480 57.7
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.7e-144 515.8 483 60.0
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 3.2e-143 512.7 442 61.3
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 2.7e-142 509.6 392 69.6
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.5e-142 509.2 387 69.0
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 2.5e-140 503.1 444 64.6
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 2.3e-138 496.5 428 62.4
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 2.3e-138 496.5 401 63.6
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.9e-136 488.8 520 55.2
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 1.6e-134 483.8 480 56.0
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 2.1e-131 473.4 483 53.6
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 2.9e-128 463.0 545 50.1
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 5.4e-127 458.8 390 64.1
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 2.1e-126 456.8 489 50.5
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 2.7e-126 456.4 392 63.3
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 1.1e-124 451.1 435 56.3
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 4.0e-122 442.6 528 49.8
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 4.9e-120 435.6 373 60.9
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.4e-119 434.1 407 59.0
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.2e-118 431.0 407 57.0
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.3e-115 421.0 389 59.6
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 2.8e-115 419.9 248 86.7
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 2.8e-107 393.3 291 68.0
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 2.4e-103 380.2 459 45.8
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 2.4e-103 380.2 440 48.2
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 4.6e-102 375.9 337 60.8
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 9.0e-98 361.7 437 46.5
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.5e-95 353.6 361 54.0
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.1e-92 344.7 271 67.9
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.3e-84 316.6 274 62.8
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 2.4e-82 310.5 260 63.5
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 7.9e-78 295.4 409 47.4
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 5.1e-77 292.7 403 42.9
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.1e-66 256.9 448 39.7
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.1e-66 256.5 360 44.7
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 6.5e-64 249.2 194 65.5
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 3.2e-63 246.9 194 66.5
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.2e-57 228.4 212 58.5
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.6e-54 218.0 390 38.2
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.3e-51 208.4 162 67.9
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.1e-50 205.3 200 56.0
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 4.5e-49 199.9 591 27.9
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 2.3e-45 187.6 137 73.7
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 1.5e-44 184.9 186 55.4
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 2.1e-38 164.5 158 56.3
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 4.0e-37 160.2 434 32.7
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 7.0e-34 149.4 97 78.4
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 4.6e-33 146.7 153 52.9
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 8.6e-32 142.5 121 56.2
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.3e-24 118.6 94 67.0
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.6e-23 113.2 87 65.5
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 7.3e-23 112.8 92 65.2
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 2.3e-21 107.8 541 25.9
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 2.0e-20 104.8 71 73.2
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 8.3e-19 99.4 90 63.3
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 8.3e-19 99.4 112 50.9
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 8.3e-19 99.4 112 50.9
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 2.4e-18 97.8 113 52.2
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.3e-16 91.3 62 77.4
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.3e-16 91.3 62 77.4
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 7.3e-15 86.3 62 67.7
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 2.1e-14 84.7 51 78.4
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 4.7e-14 83.6 80 57.5
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.5e-12 78.6 63 61.9
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 2.6e-12 77.8 69 52.2
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 3.7e-11 73.9 55 72.7
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 3.7e-11 73.9 63 63.5
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 5.4e-10 70.1 51 60.8
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.7e-08 65.1 177 31.1
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.1e-08 63.5 37 78.4
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.2e-06 58.9 68 47.1
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.1e-06 58.2 82 41.5


User provided reference genes

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