Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 1.2e-77 293.1 150 100.0
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 1.3e-71 273.1 150 92.7
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 1.4e-70 269.6 147 92.5
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 4.1e-70 268.1 151 90.7
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 1.8e-65 252.7 152 85.5
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 2.0e-64 249.2 151 84.8
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 3.4e-64 248.4 152 84.2
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 5.8e-64 247.7 150 84.0
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 9.9e-64 246.9 150 83.3
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 1.7e-63 246.1 151 84.1
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 1.7e-63 246.1 151 84.1
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 2.2e-63 245.7 155 81.9
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 6.4e-63 244.2 148 82.4
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 1.5e-59 233.0 149 79.9
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 5.6e-59 231.1 149 79.2
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 5.6e-59 231.1 149 79.2
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 8.9e-57 223.8 143 79.7
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 6.4e-55 217.6 150 74.0
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 3.1e-49 198.7 135 74.8
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 2.4e-41 172.6 133 66.9
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 4.0e-41 171.8 142 63.4
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 1.1e-38 163.7 145 62.8
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 2.1e-37 159.5 148 62.8
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 3.5e-37 158.7 146 59.6
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 7.9e-37 157.5 146 62.3
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 1.8e-36 156.4 143 61.5
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 2.3e-36 156.0 101 78.2
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 2.3e-36 156.0 147 56.5
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 3.9e-36 155.2 143 60.1
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 6.7e-36 154.5 146 62.3
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 8.7e-36 154.1 143 59.4
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 1.1e-35 153.7 148 60.8
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 1.5e-35 153.3 147 58.5
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 5.6e-35 151.4 148 58.1
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 5.6e-35 151.4 148 60.1
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 1.3e-34 150.2 143 60.8
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 1.6e-34 149.8 101 76.2
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 1.6e-34 149.8 143 58.0
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 2.8e-34 149.1 143 57.3
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 2.8e-34 149.1 144 56.9
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 3.7e-34 148.7 147 59.9
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 3.7e-34 148.7 147 57.8
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 3.7e-34 148.7 143 55.9
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 4.8e-34 148.3 101 75.2
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 4.8e-34 148.3 101 75.2
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 4.8e-34 148.3 148 57.4
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 6.2e-34 147.9 144 57.6
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 6.2e-34 147.9 147 57.1
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 8.1e-34 147.5 145 57.9
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 3.1e-33 145.6 143 55.9
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 3.1e-33 145.6 146 56.8
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 3.1e-33 145.6 148 55.4
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 5.3e-33 144.8 153 59.5
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.2e-32 143.7 146 54.1
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.2e-32 143.7 153 58.8
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.2e-32 143.7 153 58.8
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.5e-32 143.3 146 54.1
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 2.6e-32 142.5 140 55.7
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.6e-32 142.5 146 53.4
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 3.4e-32 142.1 148 58.8
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 7.6e-32 141.0 151 52.3
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 9.9e-32 140.6 149 56.4
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 9.9e-32 140.6 142 54.2
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 9.9e-32 140.6 146 53.4
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 9.9e-32 140.6 152 56.6
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 1.7e-31 139.8 142 55.6
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 2.2e-31 139.4 158 53.2
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 4.9e-31 138.3 142 51.4
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 4.9e-31 138.3 128 53.9
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 2.4e-30 136.0 144 51.4
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 4.2e-30 135.2 144 54.2
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 4.2e-30 135.2 148 52.7
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 7.1e-30 134.4 142 53.5
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 1.2e-29 133.7 147 52.4
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 1.2e-29 133.7 141 53.2
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 2.1e-29 132.9 146 50.0
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 2.1e-29 132.9 144 54.2
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 2.7e-29 132.5 147 57.8
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 1.8e-28 129.8 144 51.4
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 1.8e-28 129.8 105 62.9
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 5.1e-28 128.3 131 55.0
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 5.1e-28 128.3 139 51.8
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 6.7e-28 127.9 159 52.8
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 8.7e-28 127.5 150 50.7
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 8.7e-28 127.5 117 56.4
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 1.5e-27 126.7 136 50.7
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 1.9e-27 126.3 145 46.9
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 5.6e-27 124.8 135 51.1
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 5.6e-27 124.8 147 51.7
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 7.4e-27 124.4 144 52.1
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 7.4e-27 124.4 120 54.2
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 2.8e-26 122.5 147 53.7
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 3.7e-26 122.1 147 53.7
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 3.7e-26 122.1 105 59.0
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 4.8e-26 121.7 126 52.4
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 1.1e-25 120.6 141 51.1
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 1.4e-25 120.2 143 48.3
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 3.1e-25 119.0 136 51.5
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 4.0e-25 118.6 147 50.3
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 6.9e-25 117.9 147 51.7
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 6.9e-25 117.9 143 49.0
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.2e-24 117.1 144 49.3
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 2.0e-24 116.3 75 72.0
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 5.8e-24 114.8 140 50.7
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 7.6e-24 114.4 141 44.7
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 1.0e-23 114.0 137 51.1
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 1.3e-23 113.6 133 50.4
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 1.7e-23 113.2 142 47.2
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.4e-22 110.2 107 56.1
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 6.0e-21 104.8 129 46.5
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 6.7e-20 101.3 146 47.3
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 1.9e-19 99.8 134 48.5
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 2.5e-19 99.4 130 48.5
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 8.2e-18 94.4 106 55.7
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 8.2e-18 94.4 106 55.7
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 1.8e-17 93.2 79 58.2
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 1.7e-15 86.7 138 39.1
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 2.2e-15 86.3 87 58.6
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 1.4e-14 83.6 83 61.4
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 1.4e-14 83.6 83 61.4
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 1.3e-10 70.5 100 49.0
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 5.9e-08 61.6 98 39.8
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 1.0e-07 60.8 139 30.2
Mapoly0058s0037 Marchantia polymorpha HOM05D006043 ORTHO05D007309 1.4e-06 57.0 90 42.2
Pp3c23_8320 Physcomitrium patens HOM05D053615 ORTHO05D007309 1.4e-06 57.0 99 37.4
Nn1g08859 Nelumbo nucifera HOM05D006043 ORTHO05D007309 4.2e-06 55.5 70 52.9


User provided reference genes

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