Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 4.4e-86 321.6 208 100.0
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.7e-74 283.1 208 91.3
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 1.5e-70 270.0 206 87.9
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 2.6e-70 269.2 208 88.9
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 1.3e-66 256.9 208 84.1
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 6.1e-64 248.1 208 75.0
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 2.0e-62 243.0 210 65.7
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 2.0e-62 243.0 210 65.7
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 2.6e-62 242.7 201 66.7
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 4.4e-62 241.9 201 66.7
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 9.8e-62 240.7 208 83.7
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 2.2e-61 239.6 200 85.5
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 1.3e-58 230.3 181 78.5
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 2.3e-58 229.6 189 66.1
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 7.8e-51 204.5 202 73.3
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 1.7e-45 186.8 198 69.7
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 4.1e-44 182.2 200 68.0
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 7.0e-44 181.4 207 51.7
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 2.1e-43 179.9 203 67.5
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 2.3e-42 176.4 200 58.0
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 8.6e-42 174.5 200 65.5
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-41 173.7 209 54.5
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-41 173.7 209 54.5
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 1.6e-40 170.2 209 54.1
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 1.6e-40 170.2 202 63.4
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 6.2e-40 168.3 200 65.5
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 1.8e-39 166.8 209 53.6
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.8e-39 166.8 200 65.0
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 4.0e-39 165.6 186 73.1
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 4.0e-39 165.6 186 73.1
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 4.0e-39 165.6 186 73.1
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 4.0e-39 165.6 186 73.1
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 4.0e-39 165.6 202 66.3
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 4.0e-39 165.6 200 65.0
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 1.2e-38 164.1 202 60.9
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.5e-38 163.7 203 65.0
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 4.4e-38 162.2 199 63.8
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 1.3e-37 160.6 200 60.0
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 1.3e-37 160.6 202 63.4
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.3e-37 160.6 200 65.5
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.7e-37 160.2 203 64.0
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 1.7e-37 160.2 200 56.0
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 2.2e-37 159.8 202 64.4
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 2.2e-37 159.8 200 64.0
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 2.2e-37 159.8 201 62.2
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 2.9e-37 159.5 147 87.1
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 3.7e-37 159.1 198 64.1
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 3.7e-37 159.1 171 66.1
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 3.7e-37 159.1 171 66.1
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 8.3e-37 157.9 201 64.2
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 1.1e-36 157.5 200 64.0
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-36 157.5 200 64.0
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 1.1e-36 157.5 200 63.0
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 1.4e-36 157.1 200 64.5
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 2.4e-36 156.4 200 59.0
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 5.4e-36 155.2 200 61.5
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 7.1e-36 154.8 199 64.8
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 7.1e-36 154.8 199 64.8
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 7.1e-36 154.8 226 56.6
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 9.2e-36 154.5 200 63.5
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 9.2e-36 154.5 200 63.5
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 9.2e-36 154.5 192 65.6
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 1.2e-35 154.1 188 68.6
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 1.2e-35 154.1 188 68.6
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-35 154.1 200 63.0
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 2.1e-35 153.3 207 59.9
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 2.1e-35 153.3 200 63.5
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.6e-35 152.1 205 58.5
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 6.0e-35 151.8 200 63.0
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 6.0e-35 151.8 201 60.7
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 6.0e-35 151.8 205 59.0
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 7.8e-35 151.4 202 59.9
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 1.0e-34 151.0 200 57.0
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.3e-34 150.6 200 59.0
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 1.7e-34 150.2 181 66.9
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 1.7e-34 150.2 200 62.0
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 1.7e-34 150.2 200 62.5
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 1.7e-34 150.2 217 59.9
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 2.3e-34 149.8 219 58.9
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 2.3e-34 149.8 200 63.5
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 2.3e-34 149.8 207 59.4
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 3.0e-34 149.4 202 60.4
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 3.0e-34 149.4 200 63.5
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 3.9e-34 149.1 201 62.2
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 3.9e-34 149.1 201 62.2
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 3.9e-34 149.1 201 63.2
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 3.9e-34 149.1 200 62.0
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 3.9e-34 149.1 258 43.0
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 5.1e-34 148.7 192 64.1
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 8.6e-34 147.9 208 60.6
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 1.5e-33 147.1 200 61.0
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 1.9e-33 146.7 207 58.9
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 2.5e-33 146.4 207 55.6
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 3.3e-33 146.0 207 57.5
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 3.3e-33 146.0 209 58.4
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 4.3e-33 145.6 184 56.0
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 5.6e-33 145.2 202 60.9
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 7.3e-33 144.8 198 63.1
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 7.3e-33 144.8 172 65.7
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 9.5e-33 144.4 200 60.5
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 9.5e-33 144.4 200 61.0
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 1.2e-32 144.1 201 58.2
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 6.2e-32 141.7 204 55.4
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 6.2e-32 141.7 206 59.2
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.4e-31 140.6 189 61.4
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.8e-31 140.2 202 58.4
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 5.2e-31 138.7 201 60.7
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 5.2e-31 138.7 200 58.5
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 6.8e-31 138.3 205 49.8
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 6.8e-31 138.3 200 62.0
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 8.9e-31 137.9 200 60.0
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 2.6e-30 136.3 201 49.8
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 3.4e-30 136.0 200 58.0
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 4.4e-30 135.6 150 60.7
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 5.8e-30 135.2 208 58.2
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 7.6e-30 134.8 201 59.2
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 2.9e-29 132.9 206 56.8
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 4.9e-29 132.1 183 63.4
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.3e-26 123.2 200 48.0
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 1.5e-25 120.6 202 56.4
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 4.3e-25 119.0 205 55.6
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 2.8e-24 116.3 204 45.6
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 1.4e-23 114.0 146 56.8
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 2.4e-23 113.2 212 50.5
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 4.0e-23 112.5 159 62.3
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 4.0e-23 112.5 147 66.0
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 2.6e-22 109.8 202 43.6
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 3.4e-22 109.4 109 56.0
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.3e-21 107.5 153 55.6
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 2.1e-19 100.1 183 44.8
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 3.9e-18 95.9 138 46.4
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 8.7e-18 94.7 198 49.0
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 1.9e-17 93.6 189 50.3
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-15 87.8 148 59.5
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.8e-15 87.0 90 66.7
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.4e-15 86.7 152 56.6
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 6.9e-15 85.1 197 38.6
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 9.0e-15 84.7 167 36.5
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 1.2e-14 84.3 86 70.9
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.0e-14 83.6 143 39.2
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 1.4e-12 77.4 192 47.4
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 1.9e-09 67.0 155 33.5
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 5.6e-09 65.5 114 52.6
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 1.4e-07 60.8 60 48.3
AL7G50030 Arabidopsis lyrata HOM05D055290 ORTHO05D038628 9.9e-06 54.7 65 44.6
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 9.9e-06 54.7 109 48.6


User provided reference genes

Program Settings