Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 3.3e-237 824.7 438 100.0
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 5.5e-232 807.4 438 97.5
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 2.0e-226 788.9 438 95.2
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 6.1e-223 777.3 438 94.3
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 4.1e-219 764.6 437 92.9
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 2.9e-217 758.4 439 90.9
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 1.9e-216 755.7 439 90.4
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 5.5e-216 754.2 439 90.7
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 7.2e-216 753.8 439 90.4
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 6.1e-215 750.7 438 90.6
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 2.0e-210 735.7 437 89.7
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 3.0e-201 705.3 437 84.7
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 7.5e-189 664.1 413 81.6
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 1.3e-167 593.6 435 73.6
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.4e-163 580.1 436 70.6
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 2.4e-163 579.3 431 71.5
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 4.2e-163 578.6 431 71.2
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 6.0e-162 574.7 431 70.1
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 3.9e-161 572.0 440 69.8
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 8.7e-161 570.9 429 68.8
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.5e-160 570.1 433 69.3
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.9e-160 569.7 424 70.5
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 1.9e-160 569.7 436 69.3
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 3.3e-160 568.9 438 70.5
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 4.3e-160 568.5 457 67.8
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 4.3e-160 568.5 436 68.8
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 9.6e-160 567.4 436 69.0
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 9.6e-160 567.4 436 67.7
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 2.1e-159 566.2 438 68.5
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 4.8e-159 565.1 434 69.1
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.4e-158 562.8 438 69.4
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.1e-158 562.4 440 68.9
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 3.1e-158 562.4 436 68.1
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 9.0e-158 560.8 432 69.4
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 1.5e-157 560.1 440 69.3
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 4.5e-157 558.5 440 69.1
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.6e-157 557.8 431 70.1
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 7.6e-157 557.8 432 69.2
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 9.9e-157 557.4 437 68.2
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 9.9e-157 557.4 411 70.8
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 6.4e-156 554.7 433 68.1
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 2.5e-155 552.7 436 67.9
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.1e-154 549.7 431 69.8
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.8e-153 546.6 433 67.7
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 8.7e-153 544.3 436 67.0
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 1.5e-152 543.5 431 66.6
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.5e-152 542.7 433 67.4
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 5.6e-152 541.6 436 65.6
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 2.1e-151 539.7 441 65.8
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 6.2e-151 538.1 432 66.7
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 8.2e-151 537.7 433 66.7
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.4e-150 537.0 432 66.4
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 1.8e-150 536.6 432 66.2
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 3.1e-150 535.8 436 64.7
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 5.3e-150 535.0 430 66.5
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 3.4e-149 532.3 429 66.9
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 1.7e-148 530.0 436 63.8
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 1.7e-148 530.0 436 63.8
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.7e-148 530.0 433 64.7
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 2.2e-148 529.6 431 66.1
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 4.9e-148 528.5 440 65.2
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 8.4e-148 527.7 432 65.3
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 2.5e-147 526.2 439 64.7
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.5e-147 526.2 430 64.2
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 3.2e-147 525.8 408 67.2
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 7.1e-147 524.6 428 65.9
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 2.1e-146 523.1 426 64.8
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 3.5e-146 522.3 414 66.7
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 6.1e-146 521.5 433 65.6
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 6.1e-146 521.5 429 65.5
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.0e-145 520.8 516 57.4
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 3.0e-145 519.2 437 65.9
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 3.0e-145 519.2 439 63.3
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 6.7e-145 518.1 431 64.5
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 4.3e-144 515.4 427 64.9
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 3.7e-143 512.3 427 65.3
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 3.7e-143 512.3 427 65.3
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 6.3e-143 511.5 428 63.3
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 6.9e-142 508.1 431 63.8
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 6.9e-142 508.1 427 65.1
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.2e-141 507.3 445 63.4
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 4.5e-141 505.4 427 62.5
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.2e-140 503.1 437 62.9
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 2.9e-140 502.7 431 62.2
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 3.8e-140 502.3 431 62.2
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 3.8e-140 502.3 426 63.1
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 6.5e-140 501.5 429 62.9
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.1e-139 500.7 437 61.1
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.9e-139 500.0 431 63.8
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 1.2e-138 497.3 430 62.3
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 3.6e-138 495.7 430 63.7
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 1.0e-137 494.2 427 61.8
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 1.0e-137 494.2 375 69.6
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 1.8e-137 493.4 438 61.6
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.9e-137 492.3 432 61.8
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 6.7e-137 491.5 433 61.9
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 2.0e-136 490.0 433 59.8
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 3.3e-136 489.2 440 60.7
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.7e-136 488.4 438 61.2
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.3e-135 487.3 426 65.3
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 3.7e-135 485.7 426 61.7
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 6.3e-135 485.0 411 62.8
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.8e-134 483.4 405 64.2
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 6.9e-134 481.5 368 66.6
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 1.2e-133 480.7 417 62.6
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 3.4e-133 479.2 476 56.9
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.6e-130 470.3 433 58.4
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 4.7e-130 468.8 439 60.6
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.1e-128 464.2 419 62.8
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 7.4e-128 461.5 440 58.9
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.4e-128 461.5 416 61.3
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 4.8e-127 458.8 428 59.8
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 3.8e-124 449.1 371 64.2
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 5.0e-124 448.7 409 57.9
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 3.9e-121 439.1 433 55.7
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 6.3e-119 431.8 428 56.5
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 7.7e-117 424.9 255 91.0
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 3.8e-116 422.5 438 55.3
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.5e-115 420.6 434 57.6
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.9e-115 420.2 431 55.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 9.7e-112 407.9 517 49.3
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 1.9e-107 393.7 325 66.2
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.4e-102 377.5 342 60.5
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 5.4e-102 375.6 429 52.2
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.0e-101 373.6 432 51.9
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 2.1e-98 363.6 303 64.0
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 2.8e-98 363.2 322 63.7
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 1.2e-96 357.8 297 62.6
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 4.1e-94 349.4 184 95.7
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 1.2e-88 331.3 417 47.0
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 4.4e-88 329.3 430 44.2
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.1e-83 314.7 280 59.6
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 4.9e-71 272.7 413 44.8
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 6.0e-69 265.8 324 50.0
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.6e-66 257.7 201 68.2
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.1e-65 255.0 180 72.2
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.3e-55 221.5 190 61.1
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.9e-53 212.2 176 61.4
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.0e-49 199.9 160 68.1
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 3.4e-48 196.8 115 86.1
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.3e-47 194.9 175 60.0
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.1e-42 175.6 147 66.7
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 4.9e-39 166.4 139 56.8
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 4.9e-39 166.4 242 45.5
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 3.9e-36 156.8 120 70.0
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 4.3e-27 126.7 89 67.4
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.9e-23 114.0 80 71.2
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.0e-20 104.0 104 56.7
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.7e-18 98.2 98 54.1
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 9.1e-17 92.4 113 47.8
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 3.8e-15 87.0 331 28.4
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 3.6e-13 80.5 372 25.5
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 6.7e-12 76.3 443 23.5
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.8e-10 70.9 44 77.3
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 8.2e-10 69.3 51 70.6
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 5.0e-07 60.1 213 24.4


User provided reference genes

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