Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 8.8e-60 233.4 117 100.0
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 9.7e-51 203.4 118 88.1
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.1e-49 199.9 117 85.5
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.1e-49 199.9 117 85.5
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.1e-49 199.9 117 85.5
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.1e-49 198.0 118 86.4
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.5e-48 194.9 117 85.5
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 5.0e-47 191.0 118 84.7
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.1e-46 189.9 118 83.9
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 2.7e-45 185.3 114 82.5
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 3.8e-39 164.9 117 73.5
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 2.0e-35 152.5 117 72.6
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.7e-34 149.4 112 70.5
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 8.3e-34 147.1 112 70.5
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.8e-33 146.0 112 68.8
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 3.1e-33 145.2 112 68.8
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 2.0e-32 142.5 112 67.9
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 3.5e-32 141.7 112 67.9
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 3.5e-32 141.7 112 67.9
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 5.9e-32 141.0 113 69.0
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 5.9e-32 141.0 113 69.0
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 5.9e-32 141.0 113 69.0
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 5.9e-32 141.0 113 69.0
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 7.3e-30 134.0 125 61.6
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.6e-29 132.9 114 64.0
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 3.6e-29 131.7 111 64.9
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 3.6e-29 131.7 118 62.7
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.1e-29 131.0 91 74.7
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 2.3e-28 129.0 126 61.1
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.3e-28 129.0 126 61.1
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.0e-28 128.6 91 73.6
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.2e-28 127.9 126 60.3
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 8.9e-28 127.1 117 63.2
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 1.2e-27 126.7 120 57.5
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 1.2e-27 126.7 117 59.0
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 2.0e-27 125.9 82 76.8
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 2.0e-27 125.9 115 61.7
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.0e-27 125.9 73 82.2
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 2.0e-27 125.9 113 60.2
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 3.4e-27 125.2 113 62.8
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 3.4e-27 125.2 113 60.2
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 4.4e-27 124.8 116 60.3
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 5.8e-27 124.4 115 60.9
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 5.8e-27 124.4 79 74.7
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 7.5e-27 124.0 113 61.9
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 7.5e-27 124.0 118 61.0
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 9.8e-27 123.6 107 58.9
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 9.8e-27 123.6 80 76.2
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.3e-26 123.2 113 60.2
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 1.3e-26 123.2 107 59.8
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 1.7e-26 122.9 80 75.0
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.7e-26 122.9 113 60.2
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.7e-26 122.9 76 80.3
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.7e-26 122.9 76 80.3
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.2e-26 122.5 115 60.9
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 2.9e-26 122.1 123 56.1
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.9e-26 122.1 113 60.2
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 2.9e-26 122.1 111 62.2
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 2.9e-26 122.1 115 60.0
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 4.9e-26 121.3 106 60.4
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 8.3e-26 120.6 115 59.1
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 8.3e-26 120.6 99 64.6
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 1.1e-25 120.2 112 56.2
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 1.4e-25 119.8 109 58.7
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.4e-25 119.8 116 60.3
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.4e-25 119.8 113 60.2
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.4e-25 119.8 73 76.7
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 1.9e-25 119.4 121 55.4
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.9e-25 119.4 76 76.3
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 2.4e-25 119.0 119 58.8
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 2.4e-25 119.0 118 55.9
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 2.4e-25 119.0 118 55.9
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 3.2e-25 118.6 81 74.1
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 3.2e-25 118.6 120 58.3
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 4.1e-25 118.2 119 53.8
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 7.0e-25 117.5 126 57.9
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 7.0e-25 117.5 81 71.6
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 7.0e-25 117.5 120 58.3
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 9.2e-25 117.1 117 54.7
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 9.2e-25 117.1 119 58.0
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 9.2e-25 117.1 80 68.8
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 9.2e-25 117.1 81 74.1
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 1.2e-24 116.7 107 56.1
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 1.2e-24 116.7 119 57.1
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.2e-24 116.7 81 67.9
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 1.2e-24 116.7 81 67.9
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 1.6e-24 116.3 116 59.5
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.0e-24 115.9 119 57.1
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.7e-24 115.5 123 56.1
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 2.7e-24 115.5 123 56.9
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 2.7e-24 115.5 80 68.8
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.7e-24 115.5 132 52.3
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 2.7e-24 115.5 79 72.2
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 4.6e-24 114.8 73 78.1
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 4.6e-24 114.8 77 72.7
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 6.0e-24 114.4 81 67.9
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.0e-23 113.6 116 54.3
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 1.0e-23 113.6 79 69.6
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.7e-23 112.8 81 65.4
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.3e-23 112.5 117 53.8
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 3.0e-23 112.1 122 51.6
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.6e-23 110.9 113 57.5
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 6.6e-23 110.9 111 55.0
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 8.6e-23 110.5 80 68.8
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 8.6e-23 110.5 113 55.8
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 1.1e-22 110.2 114 51.8
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 1.1e-22 110.2 79 65.8
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 1.1e-22 110.2 79 65.8
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.5e-22 109.8 80 66.2
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 3.3e-22 108.6 71 73.2
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 5.6e-22 107.8 120 52.5
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 9.5e-22 107.1 108 58.3
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.6e-21 106.3 73 68.5
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 1.4e-20 103.2 61 80.3
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 3.1e-20 102.1 72 66.7
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.9e-20 100.5 86 61.6
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 1.2e-19 100.1 62 77.4
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 1.2e-19 100.1 81 61.7
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 4.4e-19 98.2 113 53.1
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.7e-18 96.3 117 49.6
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 8.3e-18 94.0 73 61.6
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.1e-17 93.6 81 56.8
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 1.1e-17 93.6 57 77.2
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 9.2e-17 90.5 99 54.5
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.2e-16 90.1 95 54.7
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 2.7e-16 89.0 85 55.3
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 2.7e-16 89.0 120 47.5
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 5.1e-15 84.7 51 76.5
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.1e-14 83.6 65 63.1
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.5e-14 82.4 94 54.3
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 1.2e-13 80.1 78 51.3
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 3.6e-13 78.6 44 81.8
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.6e-13 78.6 57 70.2
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 6.8e-12 74.3 53 62.3
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 7.5e-11 70.9 44 72.7
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.2e-10 69.3 139 37.4
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 5.4e-09 64.7 98 40.8


User provided reference genes

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