Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 5.8e-228 793.9 403 100.0
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 1.5e-215 752.7 403 94.5
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 3.3e-207 724.9 408 91.2
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 5.7e-207 724.2 403 91.3
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 4.6e-201 704.5 412 88.6
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 2.4e-197 692.2 389 90.0
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 6.9e-197 690.6 404 87.6
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 5.9e-196 687.6 404 87.4
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.3e-195 686.4 389 89.7
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 1.2e-193 679.9 355 97.5
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 8.8e-192 673.7 406 85.0
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.5e-191 672.9 406 84.7
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 2.6e-191 672.2 406 84.7
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 5.3e-189 664.5 404 84.7
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 3.2e-186 655.2 406 83.7
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 7.5e-167 590.9 414 75.4
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 5.0e-163 578.2 342 87.1
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 5.2e-144 515.0 426 65.7
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 3.5e-140 502.3 397 66.0
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.3e-139 500.4 367 70.0
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 3.0e-139 499.2 360 71.7
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 3.9e-139 498.8 394 66.2
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 6.6e-139 498.0 395 66.3
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 8.6e-139 497.7 397 65.5
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 1.1e-138 497.3 385 67.0
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 3.3e-138 495.7 400 65.2
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.3e-138 495.4 389 66.8
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.6e-138 495.0 389 66.6
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 5.6e-138 495.0 399 64.9
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 7.3e-138 494.6 405 64.7
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.2e-137 493.8 399 65.4
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 3.1e-136 489.2 423 62.2
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 5.2e-136 488.4 397 65.0
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 2.0e-135 486.5 397 64.0
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 3.4e-135 485.7 418 62.2
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.3e-134 483.8 394 64.5
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 8.3e-134 481.1 366 67.5
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 4.1e-133 478.8 369 67.8
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 2.7e-132 476.1 401 62.6
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.6e-132 475.3 365 67.1
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 3.0e-131 472.6 410 61.2
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.5e-130 470.3 399 61.7
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 2.5e-130 469.5 404 60.4
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 4.3e-130 468.8 394 61.9
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 7.3e-130 468.0 455 56.7
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 1.6e-129 466.8 396 61.9
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 3.6e-129 465.7 404 59.7
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 8.1e-129 464.5 394 61.2
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 8.1e-129 464.5 438 57.5
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.1e-128 464.2 403 60.0
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 3.4e-127 459.1 359 66.0
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 5.8e-127 458.4 395 62.3
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 1.3e-126 457.2 396 60.6
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.7e-126 456.8 403 59.3
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 3.8e-126 455.7 410 58.5
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.9e-125 453.4 339 70.8
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 2.4e-125 453.0 403 58.3
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 4.1e-125 452.2 357 67.5
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 2.7e-124 449.5 406 59.4
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 4.6e-124 448.7 403 57.8
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 1.0e-123 447.6 366 64.8
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 1.3e-123 447.2 391 60.1
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 3.9e-123 445.7 424 58.7
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 6.6e-123 444.9 405 60.5
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.9e-122 443.4 392 59.9
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.2e-121 440.7 395 59.2
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.6e-121 440.3 416 56.5
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 2.8e-121 439.5 386 59.6
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 1.5e-119 433.7 418 56.2
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 2.0e-119 433.3 370 61.9
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 3.4e-119 432.6 404 57.7
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 2.9e-118 429.5 389 58.1
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 3.8e-118 429.1 408 58.6
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 8.4e-118 427.9 396 59.3
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 8.4e-118 427.9 343 63.8
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.2e-117 426.0 326 70.2
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 7.1e-117 424.9 420 55.7
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 1.6e-116 423.7 415 55.9
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 4.3e-114 415.6 411 56.7
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 5.6e-114 415.2 394 57.6
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.6e-113 412.5 399 55.1
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 8.1e-113 411.4 408 54.7
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 8.1e-113 411.4 369 59.9
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 9.0e-112 407.9 319 64.9
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 9.0e-112 407.9 381 56.7
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.2e-111 407.5 446 54.9
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 7.6e-111 404.8 430 53.0
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 2.9e-110 402.9 400 57.8
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.9e-110 402.9 367 57.5
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 3.8e-110 402.5 406 56.7
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 4.9e-110 402.1 405 56.8
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 6.7e-107 391.7 408 54.4
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 6.7e-107 391.7 343 62.1
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.3e-106 389.4 325 61.5
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 4.8e-105 385.6 399 52.4
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 2.2e-102 376.7 411 53.0
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.1e-101 374.4 395 53.7
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.2e-101 372.9 371 59.6
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 1.0e-99 367.9 323 61.0
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 9.6e-98 361.3 329 59.6
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.1e-97 360.1 282 69.1
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 6.9e-96 355.1 404 51.2
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 2.2e-94 350.1 377 53.6
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.9e-94 349.7 281 68.0
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 1.1e-93 347.8 341 57.2
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 1.0e-91 341.3 316 57.9
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.8e-91 340.5 316 60.1
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.3e-89 334.3 284 61.6
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 7.2e-85 318.5 449 46.3
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.0e-75 288.1 360 48.9
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 1.1e-61 241.5 203 61.1
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 9.4e-61 238.4 391 40.7
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 2.7e-55 220.3 384 37.5
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 8.8e-51 205.3 133 78.2
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 7.0e-48 195.7 128 75.8
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 7.7e-47 192.2 406 33.5
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 2.3e-46 190.7 317 39.1
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.0e-43 181.8 121 73.6
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 9.2e-40 168.7 111 85.6
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.2e-26 125.2 88 73.9
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.9e-24 117.9 102 63.7
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 6.2e-20 102.8 86 61.6
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.1e-19 100.5 78 66.7
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 9.2e-16 89.0 152 36.8
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.7e-14 84.7 113 38.1
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 3.0e-14 84.0 64 60.9
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.4e-08 65.1 102 38.2
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 9.2e-08 62.4 143 30.8
Aa31sc80G40 Aethionema arabicum HOM05D005892 ORTHO05D007364 6.0e-07 59.7 87 44.8


User provided reference genes

Program Settings