Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G20070 Arabidopsis lyrata HOM05D004233 ORTHO05D003507 2.6e-69 265.4 144 100.0
AT3G09032 Arabidopsis thaliana HOM05D004233 ORTHO05D003507 8.6e-57 223.8 145 86.9
Carub.0003s0817 Capsella rubella HOM05D004233 ORTHO05D003507 6.1e-55 217.6 144 86.1
CARHR083380 Cardamine hirsuta HOM05D004233 ORTHO05D003507 7.5e-53 210.7 145 83.4
Sp3g07460 Schrenkiella parvula HOM05D004233 ORTHO05D003507 8.0e-47 190.7 144 76.4
Thhalv10022307m.g Eutrema salsugineum HOM05D004233 ORTHO05D003507 1.2e-45 186.8 144 74.3
BraA01t04320Z Brassica rapa HOM05D004233 ORTHO05D003507 1.4e-43 179.9 144 71.5
BcaC09g48049 Brassica carinata HOM05D004233 ORTHO05D003507 4.1e-43 178.3 144 70.8
A05p39820 Brassica napus HOM05D004233 ORTHO05D003507 9.2e-43 177.2 144 70.1
BolC1t05478H Brassica oleracea HOM05D004233 ORTHO05D003507 9.2e-43 177.2 144 70.8
BraA05t22766Z Brassica rapa HOM05D004233 ORTHO05D003507 9.2e-43 177.2 144 70.1
BcaC09g48004 Brassica carinata HOM05D004233 ORTHO05D003507 1.2e-39 166.8 145 68.3
BcaC05g29637 Brassica carinata HOM05D004233 ORTHO05D003507 8.1e-39 164.1 144 68.1
C05p58860 Brassica napus HOM05D004233 ORTHO05D003507 2.0e-37 159.5 144 67.4
BolC5t34538H Brassica oleracea HOM05D004233 ORTHO05D003507 2.0e-37 159.5 144 67.4
Thhalv10014915m.g Eutrema salsugineum HOM05D004233 ORTHO05D003507 1.7e-36 156.4 153 60.8
THA.LOC104816214 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 3.7e-36 155.2 141 61.7
CARHR211560 Cardamine hirsuta HOM05D004233 ORTHO05D003507 2.4e-35 152.5 142 57.7
THA.LOC104823286 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 4.1e-35 151.8 142 61.3
Sp6g40580 Schrenkiella parvula HOM05D004233 ORTHO05D003507 5.1e-33 144.8 148 58.1
THA.LOC104827043 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 1.1e-32 143.7 142 64.8
AL6G10960 Arabidopsis lyrata HOM05D004233 ORTHO05D003507 1.2e-31 140.2 156 58.3
AT5G01225 Arabidopsis thaliana HOM05D004233 ORTHO05D003507 8.1e-31 137.5 143 58.7
A10p33670 Brassica napus HOM05D004233 ORTHO05D003507 4.4e-29 131.7 148 56.8
BraA10t45398Z Brassica rapa HOM05D004233 ORTHO05D003507 2.9e-28 129.0 150 55.3
BcaNung07269 Brassica carinata HOM05D004233 ORTHO05D003507 1.1e-27 127.1 147 57.8
Carub.0006s0066 Capsella rubella HOM05D004233 ORTHO05D003507 4.1e-27 125.2 148 56.8
BcaNung06802 Brassica carinata HOM05D004233 ORTHO05D003507 3.3e-24 115.5 148 54.1
BolC9t60190H Brassica oleracea HOM05D004233 ORTHO05D003507 3.3e-24 115.5 148 54.1
C09p74580 Brassica napus HOM05D004233 ORTHO05D003507 7.3e-24 114.4 148 53.4
BcaC06g31968 Brassica carinata HOM05D004233 ORTHO05D003507 2.6e-21 105.9 153 50.3
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 4.4e-21 105.1 145 51.0
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 4.4e-21 105.1 148 48.6
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 7.6e-21 104.4 145 51.7
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.2e-20 102.8 146 48.6
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 6.4e-20 101.3 146 47.9
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 6.4e-20 101.3 146 47.9
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 1.2e-18 97.1 145 46.9
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 1.5e-16 90.1 152 44.7
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 2.5e-16 89.4 140 44.3
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 5.6e-16 88.2 146 45.2
CiPaw.09G207200 Carya illinoinensis HOM05D004233 ORTHO05D003507 9.6e-16 87.4 147 45.6
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 1.3e-15 87.0 147 46.9
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 2.1e-15 86.3 148 43.2
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 4.8e-15 85.1 148 45.3
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 4.8e-15 85.1 144 46.5
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 1.5e-13 80.1 148 42.6
Eucgr.K02995 Eucalyptus grandis HOM05D004233 ORTHO05D003507 2.0e-13 79.7 144 43.8
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 7.6e-13 77.8 144 41.0
Prupe.6G271900 Prunus persica HOM05D004233 ORTHO05D003507 9.9e-13 77.4 146 41.1
ClCG10G021920 Citrullus lanatus HOM05D004233 ORTHO05D003507 2.2e-12 76.3 145 43.4
Gohir.D04G129214 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.9e-12 75.9 130 43.8
Gorai.012G112300 Gossypium raimondii HOM05D004233 ORTHO05D003507 2.9e-12 75.9 130 43.8
Cpa.g.sc163.4 Carica papaya HOM05D004233 ORTHO05D003507 4.9e-12 75.1 137 46.0
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 2.4e-11 72.8 144 41.7
Gohir.A04G088850 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.2e-11 72.4 114 45.6
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 4.2e-11 72.0 92 54.3
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 4.2e-11 72.0 92 54.3
Sed0021305 Sechium edule HOM05D004233 ORTHO05D003507 4.2e-11 72.0 144 41.7
DCAR_018722 Daucus carota HOM05D004233 ORTHO05D003507 7.1e-11 71.2 144 34.7
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.2e-10 70.5 92 53.3
TWI77G0758 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 1.2e-10 70.5 145 37.9
PGR004G1616 Punica granatum HOM05D004233 ORTHO05D003507 2.1e-10 69.7 142 39.4
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 3.5e-10 68.9 104 47.1
Rhsim04G0131700 Rhododendron simsii HOM05D004233 ORTHO05D003507 4.6e-10 68.6 147 40.8
CsaV3_3G034080 Cucumis sativus L. HOM05D004233 ORTHO05D003507 6.0e-10 68.2 144 39.6
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 6.0e-10 68.2 143 38.5
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 7.9e-10 67.8 137 40.1
Sed0017480 Sechium edule HOM05D004233 ORTHO05D003507 3.0e-09 65.9 147 38.1
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 3.9e-09 65.5 152 38.2
MBI06_g42853_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 6.7e-09 64.7 145 38.6
MD12G1161500 Malus domestica HOM05D004233 ORTHO05D003507 6.7e-09 64.7 149 38.3
TAR369G1066 Trochodendron aralioides HOM05D004233 ORTHO05D003507 8.7e-09 64.3 142 37.3
Phvul.008G106800 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 5.6e-08 61.6 145 37.2
VMungo1383G3137 Vigna mungo HOM05D004233 ORTHO05D003507 7.4e-08 61.2 153 35.9
MELO3C003231.2 Cucumis melo HOM05D004233 ORTHO05D003507 9.6e-08 60.8 129 32.6
DCAR_015449 Daucus carota HOM05D004233 ORTHO05D003507 1.3e-07 60.5 140 37.9
CsaV3_4G026060 Cucumis sativus L. HOM05D004233 ORTHO05D003507 1.6e-07 60.1 129 32.6
Oeu024626.1 Olea europaea HOM05D004233 ORTHO05D003507 1.6e-07 60.1 132 37.1
TPR.G29052 Trifolium pratense HOM05D004233 ORTHO05D003507 1.6e-07 60.1 136 34.6
Medtr2g013470 Medicago truncatula HOM05D004233 ORTHO05D003507 2.1e-07 59.7 140 33.6
Oeu030524.1 Olea europaea HOM05D004233 ORTHO05D003507 2.1e-07 59.7 137 40.1
RcHm_v2.0_Chr3g0463681 Rosa chinensis HOM05D004233 ORTHO05D003507 2.1e-07 59.7 142 35.2
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 4.8e-07 58.5 141 36.2
Glyma.01G113100 Glycine max HOM05D004233 ORTHO05D003507 6.2e-07 58.2 145 31.0
Glyma.07G146500 Glycine max HOM05D004233 ORTHO05D003507 6.2e-07 58.2 142 33.1
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 6.2e-07 58.2 144 34.0
VMungo0331G0885 Vigna mungo HOM05D004233 ORTHO05D003507 8.1e-07 57.8 148 33.1
Glyma.18G197700 Glycine max HOM05D004233 ORTHO05D003507 2.4e-06 56.2 142 32.4
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 2.4e-06 56.2 142 33.1
Sp1g06050 Schrenkiella parvula HOM05D005325 ORTHO05D003507 2.4e-06 56.2 143 34.3
MSTRG.10228 Avicennia marina HOM05D004233 ORTHO05D003507 3.1e-06 55.8 138 38.4
ClCG04G007170 Citrullus lanatus HOM05D004233 ORTHO05D003507 3.1e-06 55.8 127 29.9
MBI05_g30571_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 3.1e-06 55.8 87 46.0
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 4.0e-06 55.5 95 41.1
Lsat_1_v5_gn_9_35941 Lactuca sativa HOM05D004233 ORTHO05D003507 4.0e-06 55.5 143 35.7
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 5.3e-06 55.1 143 30.8
Sopen09g007170 Solanum pennellii HOM05D004233 ORTHO05D003507 5.3e-06 55.1 142 38.7
FAN02G0664 Fragaria x ananassa HOM05D004233 ORTHO05D003507 9.0e-06 54.3 146 34.9


User provided reference genes

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