Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 2.6e-107 392.1 202 100.0
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 4.2e-94 348.2 202 90.1
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.2e-88 330.1 200 85.5
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 5.9e-88 327.8 202 86.1
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.5e-86 323.2 202 83.7
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 1.3e-74 283.5 202 73.8
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 2.3e-71 272.7 202 70.3
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 2.3e-71 272.7 202 70.3
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 8.6e-71 270.8 202 69.8
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 1.5e-67 260.0 202 67.8
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 4.6e-64 248.4 202 60.9
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 5.0e-63 245.0 199 66.3
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 4.7e-61 238.4 201 59.2
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 1.4e-60 236.9 202 59.4
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.2e-59 233.8 202 58.4
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 2.5e-54 216.1 187 67.4
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.4e-49 200.3 193 54.4
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 4.1e-49 198.7 202 48.5
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 5.4e-49 198.4 202 48.0
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 2.3e-47 193.0 199 46.7
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 1.9e-46 189.9 203 47.3
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 4.3e-46 188.7 202 46.0
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 4.3e-46 188.7 199 46.7
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 8.1e-45 184.5 202 44.6
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 1.1e-44 184.1 201 47.3
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 2.4e-44 183.0 203 45.3
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 8.9e-44 181.0 197 44.7
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 1.2e-43 180.6 202 43.1
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 2.0e-43 179.9 202 44.1
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 1.7e-42 176.8 198 43.9
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 4.9e-42 175.3 199 42.2
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 8.4e-42 174.5 200 43.0
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.1e-41 174.1 201 43.3
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 1.1e-41 174.1 199 43.7
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 1.9e-41 173.3 199 43.2
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.2e-41 172.6 202 42.6
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 7.1e-41 171.4 201 42.3
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 9.3e-41 171.0 199 43.2
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 9.3e-41 171.0 202 41.6
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.6e-40 170.2 202 41.6
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 1.6e-40 170.2 200 40.5
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 7.8e-40 167.9 198 41.9
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 1.3e-39 167.2 199 41.2
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 1.1e-38 164.1 199 42.7
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 1.1e-38 164.1 200 41.5
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.9e-38 163.3 201 46.3
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 3.3e-38 162.5 202 41.6
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 3.3e-38 162.5 199 41.2
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 4.3e-38 162.2 200 40.5
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 5.6e-38 161.8 163 55.8
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 7.3e-38 161.4 108 75.9
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 7.3e-38 161.4 184 42.4
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 1.3e-37 160.6 198 40.9
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.6e-37 159.1 198 39.9
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.8e-37 158.7 198 39.9
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.8e-37 158.7 198 39.9
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 4.8e-37 158.7 199 41.2
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 8.1e-37 157.9 198 38.9
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.4e-36 157.1 198 39.4
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 5.3e-36 155.2 199 39.2
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 2.6e-35 152.9 200 41.0
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 6.4e-34 148.3 131 63.4
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 6.4e-34 148.3 199 39.7
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 8.4e-34 147.9 142 59.9
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 1.4e-33 147.1 195 36.9
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 7.8e-32 141.4 199 37.7
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 2.3e-31 139.8 215 34.9
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.1e-30 137.5 197 33.0
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 2.5e-30 136.3 196 35.2
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 5.6e-30 135.2 272 30.5
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 5.3e-28 128.6 103 68.0
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 5.3e-28 128.6 103 67.0
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 2.0e-27 126.7 104 68.3
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 4.5e-27 125.6 103 67.0
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 4.5e-27 125.6 103 68.0
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 2.9e-26 122.9 103 66.0
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 1.6e-24 117.1 103 62.1
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 1.3e-23 114.0 198 32.8
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 5.1e-23 112.1 199 30.7
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 6.7e-23 111.7 190 32.1
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 8.7e-23 111.3 107 54.2
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.5e-22 110.5 199 31.2
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 2.5e-22 109.8 200 31.0
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 5.6e-22 108.6 195 32.3
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 1.6e-21 107.1 194 31.4
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 6.9e-20 101.7 163 33.7
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 1.3e-18 97.4 107 47.7
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 3.8e-18 95.9 180 35.0
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 8.4e-18 94.7 186 29.0
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 3.2e-17 92.8 86 44.2
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 3.2e-17 92.8 107 43.9
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 4.2e-17 92.4 86 45.3
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 9.3e-17 91.3 107 44.9
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 9.3e-17 91.3 91 42.9
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 1.6e-16 90.5 107 47.7
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 1.6e-16 90.5 118 41.5
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 2.1e-16 90.1 92 44.6
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 2.7e-16 89.7 107 41.1
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 4.6e-16 89.0 73 68.5
A07p04740 Brassica napus HOM05D004264 ORTHO05D004680 6.0e-16 88.6 73 68.5
BraA07t28261Z Brassica rapa HOM05D004264 ORTHO05D004680 6.0e-16 88.6 73 68.5
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 1.3e-15 87.4 78 47.4
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 3.0e-15 86.3 57 61.4
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 5.1e-15 85.5 78 46.2
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 1.9e-14 83.6 107 42.1
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 4.3e-14 82.4 107 41.1
BraA07t28331Z Brassica rapa HOM05D004264 ORTHO05D004680 7.4e-14 81.6 75 64.0
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 7.4e-14 81.6 62 53.2
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 7.4e-14 81.6 57 56.1
A02p28890 Brassica napus HOM05D004264 ORTHO05D004680 1.3e-13 80.9 73 65.8
BolC9t57329H Brassica oleracea HOM05D004264 ORTHO05D004680 1.3e-13 80.9 73 65.8
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 1.6e-13 80.5 113 41.6
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 1.6e-13 80.5 57 54.4
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 2.8e-13 79.7 92 33.7
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.8e-13 79.7 107 39.3
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 3.7e-13 79.3 87 35.6
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 6.2e-13 78.6 107 39.3
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.1e-12 77.8 107 38.3
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 1.1e-12 77.8 69 47.8
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 1.4e-12 77.4 107 40.2
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.4e-12 76.6 107 37.4
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.4e-12 76.6 107 37.4
A06p35970 Brassica napus HOM05D004264 ORTHO05D004680 3.1e-12 76.3 106 50.0
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 3.1e-12 76.3 56 53.6
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 3.1e-12 76.3 60 53.3
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.1e-12 75.9 107 38.3
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 4.1e-12 75.9 61 47.5
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 6.9e-12 75.1 107 39.3
A03p65190 Brassica napus HOM05D024600 ORTHO05D004680 1.5e-11 73.9 63 66.7
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 2.0e-11 73.6 107 38.3
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 2.0e-11 73.6 107 40.2
A03p36320 Brassica napus HOM05D024600 ORTHO05D004680 5.8e-11 72.0 69 62.3
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 5.8e-11 72.0 74 43.2
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 7.6e-11 71.6 181 28.7
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 1.0e-10 71.2 58 55.2
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 1.7e-10 70.5 102 37.3
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 2.2e-10 70.1 90 42.2
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 2.9e-10 69.7 113 38.1
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.9e-10 69.7 107 35.5
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 3.8e-10 69.3 66 47.0
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 1.1e-09 67.8 107 36.4
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 1.1e-09 67.8 107 35.5
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.9e-09 67.0 126 34.1
A05p35200 Brassica napus HOM05D004264 ORTHO05D004680 3.2e-09 66.2 49 73.5
A05p35220 Brassica napus HOM05D024600 ORTHO05D004680 5.5e-09 65.5 58 60.3
C09p21930 Brassica napus HOM05D024600 ORTHO05D004680 7.1e-09 65.1 58 60.3
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 7.1e-09 65.1 165 27.9
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 9.3e-09 64.7 100 34.0
BolC3t16664H Brassica oleracea HOM05D004264 ORTHO05D004680 9.3e-09 64.7 35 88.6
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 9.3e-09 64.7 108 32.4
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.6e-08 63.9 57 50.9
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 1.6e-08 63.9 52 48.1
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 1.6e-08 63.9 52 48.1
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 3.5e-08 62.8 195 21.0
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.8e-07 60.5 115 32.2
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.8e-07 60.5 115 31.3
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.8e-07 60.5 117 33.3
BolC9t57328H Brassica oleracea HOM05D024600 ORTHO05D004680 3.9e-07 59.3 64 57.8
SEGI_29872 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 3.9e-07 59.3 105 31.4
AagrBONN_evm.TU.Sc2ySwM_344.2603 Anthoceros agrestis HOM05D004264 ORTHO05D004680 1.5e-06 57.4 210 20.5
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 1.5e-06 57.4 107 33.6
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.5e-06 56.6 73 37.0
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.3e-06 55.8 99 31.3
SMO364G0587 Selaginella moellendorffii HOM05D004264 ORTHO05D004680 4.3e-06 55.8 135 27.4
C09p21940 Brassica napus HOM05D004264 ORTHO05D004680 7.4e-06 55.1 41 75.6
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 9.7e-06 54.7 107 30.8


User provided reference genes

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