Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G19570 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 1.5e-71 272.7 130 100.0
AL7G12720 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 7.0e-66 253.8 158 81.0
AT4G37925 Arabidopsis thaliana HOM05D007279 ORTHO05D009212 2.7e-65 251.9 158 80.4
Carub.0007s0229 Capsella rubella HOM05D007279 ORTHO05D009212 7.7e-65 250.4 158 80.4
CARHR246340 Cardamine hirsuta HOM05D007279 ORTHO05D009212 1.8e-61 239.2 159 77.4
BcaC01g00366 Brassica carinata HOM05D007279 ORTHO05D009212 5.7e-60 234.2 159 74.8
C03p78920 Brassica napus HOM05D007279 ORTHO05D009212 5.7e-60 234.2 159 74.8
BolC3t20136H Brassica oleracea HOM05D007279 ORTHO05D009212 5.7e-60 234.2 159 74.8
A08p22940 Brassica napus HOM05D007279 ORTHO05D009212 1.3e-59 233.0 159 74.8
BraA08t34256Z Brassica rapa HOM05D007279 ORTHO05D009212 2.8e-59 231.9 159 74.2
Thhalv10026209m.g Eutrema salsugineum HOM05D007279 ORTHO05D009212 3.7e-59 231.5 156 76.3
BcaB03g12324 Brassica carinata HOM05D007279 ORTHO05D009212 4.8e-59 231.1 159 74.2
Sp7g35570 Schrenkiella parvula HOM05D007279 ORTHO05D009212 1.8e-58 229.2 159 74.2
Aa31LG6G14860 Aethionema arabicum HOM05D007279 ORTHO05D009212 2.5e-47 192.2 157 65.0
QL09p032239 Quercus lobata HOM05D007279 ORTHO05D009212 7.3e-47 190.7 151 65.6
THA.LOC104808254 Tarenaya hassleriana HOM05D007279 ORTHO05D009212 7.3e-47 190.7 144 68.1
Gohir.D03G063100 Gossypium hirsutum HOM05D007279 ORTHO05D009212 9.5e-47 190.3 155 65.2
Gorai.013G108300 Gossypium raimondii HOM05D007279 ORTHO05D009212 9.5e-47 190.3 155 65.2
Gohir.A02G110900 Gossypium hirsutum HOM05D007279 ORTHO05D009212 2.8e-46 188.7 155 64.5
Sabra05G0138700 Salix brachista HOM05D007279 ORTHO05D009212 1.4e-45 186.4 154 64.3
MD15G1133300 Malus domestica HOM05D007279 ORTHO05D009212 1.8e-45 186.0 142 64.8
CANSAT25G0430 Cannabis sativa HOM05D007279 ORTHO05D009212 3.1e-45 185.3 156 62.2
TWI34G0215 Tripterygium wilfordii HOM05D007279 ORTHO05D009212 5.2e-45 184.5 143 65.0
CsaV3_7G022180 Cucumis sativus L. HOM05D007279 ORTHO05D009212 6.8e-45 184.1 156 60.3
Lalb_Chr08g0241031 Lupinus albus HOM05D007279 ORTHO05D009212 8.9e-45 183.7 103 84.5
Potri.005G183000 Populus trichocarpa HOM05D007279 ORTHO05D009212 8.9e-45 183.7 154 63.6
Eucgr.F03852 Eucalyptus grandis HOM05D007279 ORTHO05D009212 1.5e-44 183.0 148 64.2
Prupe.1G488900 Prunus persica HOM05D007279 ORTHO05D009212 2.6e-44 182.2 147 61.9
Atru.chr13.1590 Acer truncatum HOM05D007279 ORTHO05D009212 3.4e-44 181.8 154 61.7
Duzib093G1369 Durio zibethinus HOM05D007279 ORTHO05D009212 5.8e-44 181.0 156 62.2
Sabra02G0061000 Salix brachista HOM05D007279 ORTHO05D009212 1.3e-43 179.9 134 67.9
MELO3C012712.2 Cucumis melo HOM05D007279 ORTHO05D009212 1.7e-43 179.5 155 60.6
Potri.002G077600 Populus trichocarpa HOM05D007279 ORTHO05D009212 1.7e-43 179.5 103 83.5
Ciclev10002484m.g Citrus clementina HOM05D007279 ORTHO05D009212 2.9e-43 178.7 146 62.3
unitig_46.g18082 Utricularia gibba HOM05D007279 ORTHO05D009212 3.7e-43 178.3 138 66.7
Glyma.04G245200 Glycine max HOM05D007279 ORTHO05D009212 8.3e-43 177.2 142 63.4
Glyma.06G118000 Glycine max HOM05D007279 ORTHO05D009212 8.3e-43 177.2 142 63.4
ClCG09G021820 Citrullus lanatus HOM05D007279 ORTHO05D009212 1.1e-42 176.8 139 63.3
Manes.02G169000 Manihot esculenta HOM05D007279 ORTHO05D009212 1.1e-42 176.8 140 65.0
GSVIVG01008801001 Vitis vinifera HOM05D007279 ORTHO05D009212 1.9e-42 176.0 153 62.7
Cfa018422 Carpinus fangiana HOM05D007279 ORTHO05D009212 5.4e-42 174.5 137 65.7
Sed0026443 Sechium edule HOM05D007279 ORTHO05D009212 7.0e-42 174.1 139 62.6
Psat5g084400 Pisum sativum HOM05D007279 ORTHO05D009212 9.2e-42 173.7 142 61.3
AUR62007704 Chenopodium quinoa HOM05D007279 ORTHO05D009212 1.2e-41 173.3 146 58.2
MSTRG.1407 Avicennia marina HOM05D007279 ORTHO05D009212 1.6e-41 172.9 136 66.2
EL10Ac1g01365 Beta vulgaris HOM05D007279 ORTHO05D009212 2.0e-41 172.6 146 59.6
Nitab4.5_0000317g0110 Nicotiana tabacum HOM05D007279 ORTHO05D009212 3.5e-41 171.8 140 65.0
Nitab4.5_0003485g0020 Nicotiana tabacum HOM05D007279 ORTHO05D009212 3.5e-41 171.8 140 65.0
Cc10_g13680 Coffea canephora HOM05D007279 ORTHO05D009212 4.6e-41 171.4 154 60.4
COL.COLO4_33390 Corchorus olitorius HOM05D007279 ORTHO05D009212 4.6e-41 171.4 155 60.0
Lsat_1_v5_gn_1_7161 Lactuca sativa HOM05D007279 ORTHO05D009212 4.6e-41 171.4 103 79.6
HanXRQChr02g0045151 Helianthus annuus HOM05D007279 ORTHO05D009212 6.0e-41 171.0 103 79.6
Dinv27265 Davidia involucrata HOM05D007279 ORTHO05D009212 7.8e-41 170.6 158 61.4
Migut.C01071 Erythranthe guttata HOM05D007279 ORTHO05D009212 7.8e-41 170.6 100 79.0
AUR62013436 Chenopodium quinoa HOM05D007279 ORTHO05D009212 1.0e-40 170.2 146 57.5
FvH4_2g27960 Fragaria vesca HOM05D007279 ORTHO05D009212 1.0e-40 170.2 139 62.6
Ah.05g169060 Amaranthus hybridus HOM05D007279 ORTHO05D009212 1.7e-40 169.5 138 60.9
arahy.Tifrunner.gnm1.ann1.03R76N Arachis hypogaea HOM05D007279 ORTHO05D009212 1.7e-40 169.5 144 60.4
arahy.Tifrunner.gnm1.ann1.G5JU44 Arachis hypogaea HOM05D007279 ORTHO05D009212 1.7e-40 169.5 144 60.4
FAN20G2640 Fragaria x ananassa HOM05D007279 ORTHO05D009212 1.7e-40 169.5 139 61.9
Peaxi162Scf00066g00422 Petunia axillaris HOM05D007279 ORTHO05D009212 1.7e-40 169.5 140 61.4
PGR044G1698 Punica granatum HOM05D007279 ORTHO05D009212 1.7e-40 169.5 144 61.1
FAN27G1298 Fragaria x ananassa HOM05D007279 ORTHO05D009212 2.3e-40 169.1 136 64.0
CiPaw.16G022500 Carya illinoinensis HOM05D007279 ORTHO05D009212 3.9e-40 168.3 154 58.4
FAN24G0438 Fragaria x ananassa HOM05D007279 ORTHO05D009212 5.0e-40 167.9 139 61.9
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 8.6e-40 167.2 97 81.4
ECA247G0566 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.6e-40 167.2 145 62.1
CAN.G405.7 Capsicum annuum HOM05D007279 ORTHO05D009212 1.1e-39 166.8 134 63.4
Solyc04g057980.3 Solanum lycopersicum HOM05D007279 ORTHO05D009212 1.1e-39 166.8 134 64.2
Sopen04g025840 Solanum pennellii HOM05D007279 ORTHO05D009212 1.1e-39 166.8 134 64.2
PGSC0003DMG400025319 Solanum tuberosum HOM05D007279 ORTHO05D009212 1.1e-39 166.8 134 64.2
RcHm_v2.0_Chr6g0296781 Rosa chinensis HOM05D007279 ORTHO05D009212 1.5e-39 166.4 139 61.2
Rhsim02G0113900 Rhododendron simsii HOM05D007279 ORTHO05D009212 1.9e-39 166.0 103 78.6
Rhsim02G0114000 Rhododendron simsii HOM05D007279 ORTHO05D009212 1.9e-39 166.0 103 78.6
Rhsim02G0113400 Rhododendron simsii HOM05D007279 ORTHO05D009212 2.5e-39 165.6 103 78.6
Ca_16613_v3 Cicer arietinum L. HOM05D007279 ORTHO05D009212 4.3e-39 164.9 137 62.0
Medtr3g088645 Medicago truncatula HOM05D007279 ORTHO05D009212 4.3e-39 164.9 142 59.2
Lj4A677T28 Lonicera japonica HOM05D007279 ORTHO05D009212 1.2e-38 163.3 141 60.3
Lj4A679T22 Lonicera japonica HOM05D007279 ORTHO05D009212 1.2e-38 163.3 141 60.3
CSS0035764 Camellia sinensis var. sinensis HOM05D007279 ORTHO05D009212 1.6e-38 162.9 97 80.4
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 3.6e-38 161.8 105 73.3
Aqoxy6G00304 Aquilegia oxysepala HOM05D007279 ORTHO05D009212 4.7e-38 161.4 140 62.1
DCAR_016660 Daucus carota HOM05D007279 ORTHO05D009212 8.0e-38 160.6 140 61.4
Hma1.2p1_0880F.1_g231840 Hydrangea macrophylla HOM05D007279 ORTHO05D009212 1.4e-37 159.8 143 59.4
Lj1g0002247 Lotus japonicus HOM05D007279 ORTHO05D009212 1.4e-37 159.8 97 76.3
VMungo1309G2060 Vigna mungo HOM05D007279 ORTHO05D009212 1.8e-37 159.5 97 77.3
Phvul.009G130400 Phaseolus vulgaris HOM05D007279 ORTHO05D009212 1.2e-36 156.8 137 59.1
TAR628G0029 Trochodendron aralioides HOM05D007279 ORTHO05D009212 1.5e-36 156.4 132 61.4
Nn5g28445 Nelumbo nucifera HOM05D007279 ORTHO05D009212 2.0e-36 156.0 92 80.4
vmacro17341 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 2.6e-36 155.6 109 72.5
PSO528G0084 Papaver somniferum HOM05D007279 ORTHO05D009212 5.8e-36 154.5 139 58.3
PSO170G3576 Papaver somniferum HOM05D007279 ORTHO05D009212 3.7e-35 151.8 139 57.6
MBI03_g13490_MAGBIO Magnolia biondii HOM05D007279 ORTHO05D009212 8.3e-35 150.6 125 63.2
Os04g0539000 Oryza sativa ssp. japonica HOM05D007279 ORTHO05D009212 1.1e-34 150.2 142 52.8
ATR0681G064 Amborella trichopoda HOM05D007279 ORTHO05D009212 1.4e-34 149.8 88 79.5
Thecc.08G133700 Theobroma cacao HOM05D007279 ORTHO05D009212 1.4e-34 149.8 91 79.1
SEGI_28724 Sequoiadendron giganteum HOM05D007279 ORTHO05D009212 1.5e-31 139.8 95 70.5
Zm00001eb075370 Zea mays HOM05D007279 ORTHO05D009212 1.5e-31 139.8 134 53.7
TAR623G1519 Trochodendron aralioides HOM05D007279 ORTHO05D009212 4.9e-27 124.8 104 58.7
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.4e-26 122.5 139 50.4
CBR_g26037 Chara braunii HOM05D007279 ORTHO05D009212 9.2e-26 120.6 87 63.2
Pp3c1_14910 Physcomitrium patens HOM05D007279 ORTHO05D009212 7.8e-25 117.5 101 57.4
SMO339G0044 Selaginella moellendorffii HOM05D007279 ORTHO05D009212 6.6e-24 114.4 79 65.8
vmacro17338 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 6.6e-24 114.4 109 59.6
vmacro17312 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 3.3e-23 112.1 71 74.6
Mapoly0063s0013 Marchantia polymorpha HOM05D007279 ORTHO05D009212 9.5e-23 110.5 94 57.4
AagrBONN_evm.TU.Sc2ySwM_344.1177 Anthoceros agrestis HOM05D007279 ORTHO05D009212 1.2e-20 103.6 95 55.8
TPR.G6347 Trifolium pratense HOM05D007279 ORTHO05D009212 4.6e-17 91.7 87 52.9
SalBow7G1271 Salvia bowleyana HOM05D007279 ORTHO05D009212 2.9e-11 72.4 60 61.7
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 6.0e-09 64.7 65 52.3
Zm00001eb427570 Zea mays HOM05D007279 ORTHO05D009212 3.6e-06 55.5 74 39.2


User provided reference genes

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