Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.2e-183 646.4 323 100.0
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 6.0e-175 617.5 324 95.7
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 3.2e-160 568.5 330 88.2
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.4e-152 542.3 336 84.8
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 9.3e-152 540.4 336 83.9
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.5e-146 523.1 323 82.0
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 4.5e-138 495.0 322 79.5
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 2.2e-137 492.7 321 78.5
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 7.1e-136 487.6 328 78.0
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 1.6e-135 486.5 319 78.4
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 1.0e-134 483.8 320 78.4
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 1.3e-132 476.9 308 78.9
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.3e-132 476.9 320 78.1
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 2.8e-132 475.7 311 79.4
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 3.1e-131 472.2 308 79.5
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 3.6e-127 458.8 347 70.6
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 5.7e-125 451.4 357 67.8
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 1.4e-123 446.8 327 69.4
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 3.1e-123 445.7 328 69.2
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 8.5e-121 437.6 359 65.7
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 8.5e-121 437.6 359 65.7
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.4e-120 436.8 342 66.7
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 3.2e-120 435.6 358 65.6
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 7.9e-119 431.0 354 65.3
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.0e-118 430.6 359 62.4
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.4e-118 430.3 339 65.5
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 2.3e-118 429.5 361 62.6
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 3.9e-118 428.7 260 79.2
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 6.7e-118 427.9 324 67.6
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 6.7e-118 427.9 358 63.1
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 6.7e-118 427.9 359 62.7
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 6.7e-118 427.9 359 61.8
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 2.0e-117 426.4 356 63.2
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 2.0e-117 426.4 357 62.2
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 2.6e-117 426.0 361 62.9
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 2.6e-117 426.0 356 63.5
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 4.4e-117 425.2 360 63.1
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 7.4e-117 424.5 363 62.0
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 9.7e-117 424.1 357 63.6
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 1.7e-116 423.3 345 63.8
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 1.7e-116 423.3 366 60.7
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 2.8e-116 422.5 362 63.0
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 3.7e-116 422.2 357 63.6
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 4.8e-116 421.8 359 59.9
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 8.2e-116 421.0 358 62.0
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 8.2e-116 421.0 380 58.7
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 2.4e-115 419.5 356 62.1
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 3.1e-115 419.1 362 63.3
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 4.1e-115 418.7 361 60.7
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 5.3e-115 418.3 362 60.5
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 9.1e-115 417.5 362 60.2
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.2e-114 417.2 352 62.5
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 1.2e-114 417.2 346 63.3
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 1.5e-114 416.8 361 61.5
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 2.0e-114 416.4 345 61.4
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 2.6e-114 416.0 351 61.5
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 5.9e-114 414.8 362 61.3
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.0e-113 414.1 356 61.0
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 2.9e-113 412.5 359 58.2
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 5.0e-113 411.8 353 62.0
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 8.5e-113 411.0 359 60.2
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 1.4e-112 410.2 312 67.0
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.4e-112 410.2 348 60.1
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 1.9e-112 409.8 345 64.6
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 3.6e-111 405.6 344 61.6
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 7.9e-111 404.4 360 59.4
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.8e-110 403.3 360 58.6
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 2.3e-110 402.9 349 60.2
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 3.9e-110 402.1 343 59.5
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 3.9e-110 402.1 363 58.7
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 3.9e-110 402.1 358 58.4
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 3.9e-110 402.1 362 59.7
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 6.7e-110 401.4 293 70.0
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 8.8e-110 401.0 422 52.6
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 8.8e-110 401.0 296 69.6
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 1.1e-109 400.6 363 58.7
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.1e-109 400.6 323 64.1
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 1.1e-109 400.6 360 58.3
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 4.4e-109 398.7 320 57.8
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 4.4e-109 398.7 358 57.8
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 4.4e-109 398.7 337 55.8
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 5.7e-109 398.3 359 58.8
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.7e-108 396.7 335 61.8
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 4.8e-108 395.2 363 57.6
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 6.3e-108 394.8 339 61.4
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 6.3e-108 394.8 363 58.7
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 6.3e-108 394.8 365 59.5
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 8.2e-108 394.4 323 57.9
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 1.1e-107 394.0 323 62.5
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 2.4e-107 392.9 327 64.2
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 4.1e-107 392.1 319 65.2
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.1e-107 392.1 371 57.1
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 5.3e-107 391.7 351 59.5
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 7.0e-107 391.3 296 68.6
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 9.1e-107 391.0 314 58.9
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 1.2e-106 390.6 317 66.6
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 1.6e-106 390.2 340 61.8
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 3.5e-106 389.0 328 62.5
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 1.3e-105 387.1 340 58.8
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 6.5e-105 384.8 420 52.4
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 2.7e-103 379.4 336 59.2
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 4.7e-103 378.6 345 60.3
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 6.1e-103 378.3 327 60.9
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 8.0e-103 377.9 320 61.6
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.8e-102 376.7 322 63.0
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 1.5e-101 373.6 322 63.4
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 2.6e-101 372.9 324 63.3
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.2e-100 369.8 232 72.0
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 8.2e-100 367.9 328 59.8
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.8e-99 366.7 328 58.8
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.8e-99 366.7 328 58.8
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 2.4e-99 366.3 228 70.2
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 5.3e-99 365.2 328 58.2
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.2e-98 364.0 318 61.0
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 1.6e-95 353.6 328 57.0
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 2.4e-91 339.7 198 74.7
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 3.1e-91 339.3 321 58.6
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 1.2e-90 337.4 317 56.5
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 1.1e-88 330.9 300 55.3
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 1.9e-88 330.1 188 76.1
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 1.9e-88 330.1 340 46.2
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 4.7e-87 325.5 336 53.9
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 8.0e-87 324.7 190 73.7
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 7.5e-85 318.2 297 60.3
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 9.8e-85 317.8 413 43.3
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 9.8e-85 317.8 323 56.0
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 2.8e-84 316.2 323 53.6
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 2.4e-83 313.2 282 52.5
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.0e-83 311.6 246 59.8
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 9.2e-83 311.2 325 48.0
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.7e-82 309.7 292 57.9
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.3e-81 307.4 347 52.4
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.9e-81 306.2 293 57.0
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 3.3e-80 302.8 292 56.8
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 1.8e-78 297.0 290 50.7
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.5e-77 293.9 315 51.1
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 1.7e-76 290.4 285 49.8
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 2.9e-76 289.7 312 52.6
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 9.2e-75 284.6 320 52.2
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 9.2e-75 284.6 317 52.1
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 2.0e-74 283.5 318 52.5
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 2.7e-74 283.1 322 48.4
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 3.5e-74 282.7 319 51.4
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 2.3e-73 280.0 321 50.8
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 3.9e-73 279.3 303 51.5
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 8.6e-73 278.1 296 54.4
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.5e-72 277.3 332 45.5
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 4.3e-72 275.8 319 50.2
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 4.7e-71 272.3 313 50.2
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 1.1e-70 271.2 316 48.4
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 1.1e-70 271.2 319 50.2
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.3e-70 270.0 321 44.9
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 7.5e-69 265.0 321 48.0
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.5e-66 256.1 327 50.2
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.8e-62 241.9 257 48.6
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 8.6e-57 224.9 220 44.5
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.6e-55 220.7 316 44.6
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 2.4e-54 216.9 322 44.1
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.3e-52 211.1 339 39.8
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 3.5e-50 203.0 284 43.0
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.6e-47 194.1 234 44.0
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 1.5e-45 187.6 108 75.9
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 6.4e-44 182.2 108 74.1
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 6.6e-41 172.2 93 80.6
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 7.4e-16 89.0 126 35.7
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 1.7e-12 77.8 38 81.6
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 2.9e-12 77.0 48 66.7
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 3.3e-08 63.5 56 62.5
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 1.1e-06 58.5 41 63.4
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 5.3e-06 56.2 44 56.8


User provided reference genes

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