Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 1.1e-165 586.6 305 100.0
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.6e-161 572.8 305 97.4
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 3.0e-160 568.5 305 96.1
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 3.9e-160 568.2 305 95.7
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 2.2e-158 562.4 305 95.1
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 8.2e-158 560.5 305 94.1
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 4.1e-157 558.1 305 94.1
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.5e-156 556.2 305 93.8
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 2.6e-156 555.4 306 93.8
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 1.9e-154 549.3 310 92.9
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 3.2e-154 548.5 306 92.2
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 7.2e-154 547.4 298 94.0
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.6e-153 546.2 298 94.0
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 2.2e-150 535.8 306 90.2
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.0e-147 526.9 287 93.7
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 3.2e-138 495.4 305 83.0
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.8e-125 453.0 308 75.3
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 7.0e-125 451.1 309 74.4
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 1.0e-123 447.2 305 72.8
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.3e-123 446.8 309 74.1
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.2e-123 446.0 305 73.4
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.1e-122 443.7 305 73.1
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 1.9e-122 443.0 305 72.8
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 7.2e-122 441.0 309 72.2
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 9.5e-122 440.7 305 72.8
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-121 440.3 305 72.1
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.2e-121 440.3 305 72.1
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 2.1e-121 439.5 303 72.9
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 2.7e-121 439.1 307 73.9
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.7e-121 439.1 299 74.2
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.4e-120 436.8 303 73.9
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.4e-120 436.8 302 72.8
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.3e-120 436.0 309 72.5
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 5.2e-120 434.9 308 72.4
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.5e-119 433.3 305 70.8
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.5e-119 433.3 309 71.5
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 2.2e-118 429.5 303 71.9
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 2.2e-118 429.5 306 71.6
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 2.8e-118 429.1 301 71.4
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 6.3e-118 427.9 310 71.3
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.1e-117 427.2 309 69.9
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.4e-117 426.8 309 69.9
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 2.4e-117 426.0 309 69.9
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.4e-117 426.0 305 69.8
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.1e-117 425.6 303 71.6
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 4.1e-117 425.2 309 69.9
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 4.1e-117 425.2 303 71.6
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 5.4e-117 424.9 309 69.6
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 5.4e-117 424.9 309 70.9
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 1.2e-116 423.7 303 71.9
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.2e-116 423.7 303 71.9
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.2e-116 423.7 305 69.8
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 3.5e-116 422.2 301 72.4
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 3.5e-116 422.2 301 70.4
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 4.5e-116 421.8 298 74.2
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 5.9e-116 421.4 386 59.3
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 5.9e-116 421.4 304 71.1
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 5.9e-116 421.4 309 71.2
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 1.0e-115 420.6 309 70.6
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 3.8e-115 418.7 344 65.4
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 3.8e-115 418.7 312 68.6
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.1e-114 417.2 309 68.6
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.5e-114 416.8 309 69.3
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 4.3e-114 415.2 309 67.6
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 9.5e-114 414.1 308 69.5
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.5e-114 414.1 304 69.4
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.2e-113 413.7 301 68.8
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 1.6e-113 413.3 300 67.7
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 2.8e-113 412.5 310 68.4
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 3.6e-113 412.1 341 63.3
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.6e-113 412.1 305 70.2
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 6.1e-113 411.4 300 67.0
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 6.1e-113 411.4 306 68.3
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.0e-112 410.6 309 68.3
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 1.0e-112 410.6 300 67.3
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.4e-112 410.2 301 69.1
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.4e-112 410.2 271 74.5
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.8e-112 409.8 306 66.3
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 5.2e-112 408.3 306 67.0
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.5e-111 406.8 306 68.6
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 2.6e-111 406.0 297 67.0
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 9.8e-111 404.1 340 64.7
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 3.7e-110 402.1 304 68.4
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 3.7e-110 402.1 307 67.4
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.9e-110 401.7 304 67.4
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.4e-110 401.4 306 68.6
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 8.3e-110 401.0 305 68.9
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.1e-109 400.6 296 68.9
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 1.4e-109 400.2 296 68.6
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.8e-109 399.8 309 67.6
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 5.4e-109 398.3 295 68.1
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.2e-108 397.1 309 66.7
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.2e-108 397.1 302 68.2
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.6e-108 396.7 307 65.5
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.6e-108 396.7 305 65.2
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 2.7e-108 396.0 284 71.1
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.6e-108 395.2 305 66.6
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 4.6e-108 395.2 296 67.6
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 4.6e-108 395.2 291 68.0
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 5.9e-108 394.8 312 65.4
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 7.8e-108 394.4 305 66.6
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 7.8e-108 394.4 310 66.5
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 1.0e-107 394.0 354 59.3
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.3e-107 393.7 303 67.0
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 6.6e-107 391.3 305 65.9
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.1e-106 390.6 301 65.1
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.5e-106 390.2 301 65.1
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 8.0e-105 384.4 269 69.9
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.4e-104 383.6 305 66.2
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 6.8e-104 381.3 304 66.1
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.2e-102 376.3 259 73.4
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 1.1e-101 374.0 266 68.8
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 4.1e-101 372.1 305 62.3
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 9.2e-101 370.9 282 65.2
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.7e-100 369.4 284 64.1
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 2.7e-100 369.4 310 63.5
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.5e-100 369.0 257 71.2
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 2.5e-98 362.8 305 62.0
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 3.3e-98 362.5 310 62.3
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 3.6e-97 359.0 274 67.2
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.1e-96 357.5 305 59.3
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.8e-96 356.7 307 60.6
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 3.1e-96 355.9 300 63.7
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 5.8e-95 351.7 299 60.2
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 2.9e-94 349.4 300 60.7
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.4e-93 347.1 300 59.7
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.6e-91 337.8 287 60.6
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 6.2e-89 331.6 223 73.5
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.2e-84 317.4 269 59.1
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 8.6e-83 311.2 230 70.4
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 1.1e-80 304.3 286 54.9
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 2.6e-79 299.7 274 58.4
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 5.8e-79 298.5 299 50.5
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 3.8e-78 295.8 291 54.6
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 8.7e-75 284.6 303 50.5
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.6e-73 280.4 310 49.4
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 3.6e-73 279.3 278 53.2
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.1e-69 267.7 301 53.5
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.9e-69 266.9 277 50.9
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 6.0e-68 261.9 274 50.7
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 6.7e-67 258.5 285 47.4
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 1.1e-66 257.7 247 56.7
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.5e-66 257.3 285 47.0
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.8e-65 253.1 203 64.0
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 2.9e-62 243.0 195 66.7
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 3.0e-59 233.0 219 58.4
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 3.0e-59 233.0 233 51.9
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 9.6e-58 228.0 187 63.1
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 9.3e-53 211.5 219 50.7
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.6e-52 210.7 310 44.5
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 2.7e-52 209.9 148 69.6
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 2.5e-50 203.4 183 57.4
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.3e-49 201.1 210 50.0
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 2.8e-49 199.9 284 40.8
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 1.1e-48 198.0 149 65.8
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.7e-41 174.1 159 57.2
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.7e-33 147.5 273 35.5
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 6.7e-27 125.6 312 29.2
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-25 120.9 104 63.5
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 8.5e-22 108.6 210 32.9
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 3.6e-20 103.2 127 51.2
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 8.0e-20 102.1 114 50.0
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 5.2e-19 99.4 76 68.4
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 2.0e-18 97.4 286 26.6
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.3e-14 84.7 271 28.8
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 4.1e-08 63.2 71 45.1
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.8e-06 56.6 184 31.5


User provided reference genes

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