Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 1.6e-63 246.1 146 100.0
Carub.0003s0715 Capsella rubella HOM05D005992 ORTHO05D007476 4.0e-46 188.3 142 85.2
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 7.1e-43 177.6 142 64.8
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 3.0e-41 172.2 142 62.0
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 3.1e-38 162.2 142 58.5
AT3G07580 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 1.2e-37 160.2 117 80.3
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 4.5e-37 158.3 142 57.7
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 4.5e-37 158.3 142 57.7
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 2.2e-36 156.0 152 55.9
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 1.1e-35 153.7 136 56.6
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 1.1e-32 143.7 144 53.5
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 1.1e-32 143.7 153 51.6
CARHR082280 Cardamine hirsuta HOM05D005992 ORTHO05D007476 4.3e-32 141.7 142 54.9
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 3.0e-25 119.0 110 54.5
Aa31LG5G18140 Aethionema arabicum HOM05D005992 ORTHO05D007476 2.0e-24 116.3 86 61.6
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 7.4e-24 114.4 110 53.6
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 9.1e-22 107.5 108 53.7
BcaC05g29553 Brassica carinata HOM05D005992 ORTHO05D007476 7.2e-19 97.8 103 50.5
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 6.7e-17 91.3 154 35.1
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 4.8e-15 85.1 88 46.6
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 6.3e-15 84.7 92 45.7
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 1.4e-14 83.6 83 48.2
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 2.4e-14 82.8 92 44.6
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 2.4e-14 82.8 92 44.6
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 2.4e-14 82.8 149 36.9
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 3.1e-14 82.4 141 38.3
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 3.1e-14 82.4 92 43.5
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 3.1e-14 82.4 88 45.5
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 4.1e-14 82.0 92 44.6
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 1.2e-13 80.5 153 34.6
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 1.2e-13 80.5 144 33.3
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 1.6e-13 80.1 90 44.4
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.0e-13 79.7 153 33.3
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 2.0e-13 79.7 146 32.9
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 2.0e-13 79.7 135 34.8
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 2.6e-13 79.3 153 32.7
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.6e-13 79.3 153 32.7
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 2.6e-13 79.3 98 37.8
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 2.6e-13 79.3 135 35.6
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 4.5e-13 78.6 155 32.9
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 4.5e-13 78.6 88 43.2
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 4.5e-13 78.6 84 45.2
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 5.9e-13 78.2 135 34.1
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 7.7e-13 77.8 90 44.4
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 1.0e-12 77.4 94 40.4
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 1.0e-12 77.4 94 40.4
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 1.0e-12 77.4 84 42.9
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 1.3e-12 77.0 98 39.8
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 1.3e-12 77.0 84 47.6
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 1.7e-12 76.6 82 41.5
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 2.2e-12 76.3 143 32.9
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 2.2e-12 76.3 88 43.2
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 2.9e-12 75.9 151 33.1
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 3.8e-12 75.5 90 43.3
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 3.8e-12 75.5 89 41.6
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 5.0e-12 75.1 88 45.5
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 5.0e-12 75.1 84 42.9
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 5.0e-12 75.1 92 44.6
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 8.5e-12 74.3 150 33.3
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 1.1e-11 73.9 88 46.6
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 2.5e-11 72.8 148 31.8
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 2.5e-11 72.8 91 42.9
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 4.2e-11 72.0 137 33.6
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 7.2e-11 71.2 88 44.3
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 7.2e-11 71.2 137 33.6
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 2.1e-10 69.7 100 40.0
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 2.7e-10 69.3 89 44.9
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.6e-10 68.9 152 29.6
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.6e-10 68.9 153 30.1
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 4.7e-10 68.6 64 51.6
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 6.1e-10 68.2 155 29.7
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 6.1e-10 68.2 161 28.6
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 6.1e-10 68.2 91 39.6
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 8.0e-10 67.8 84 38.1
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 1.0e-09 67.4 122 37.7
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 1.0e-09 67.4 153 27.5
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 1.0e-09 67.4 66 50.0
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 1.8e-09 66.6 64 48.4
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 1.8e-09 66.6 152 27.6
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 1.8e-09 66.6 153 27.5
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 4.0e-09 65.5 68 48.5
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 4.0e-09 65.5 68 48.5
BcaC04g23782 Brassica carinata HOM05D005992 ORTHO05D007476 6.7e-09 64.7 78 47.4
C09p04700 Brassica napus HOM05D005992 ORTHO05D007476 6.7e-09 64.7 78 47.4
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 8.8e-09 64.3 149 28.2
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 1.2e-08 63.9 129 30.2
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 1.5e-08 63.5 127 33.1
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 1.5e-08 63.5 75 42.7
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 1.5e-08 63.5 145 31.0
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 1.5e-08 63.5 66 47.0
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 2.6e-08 62.8 77 42.9
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.3e-08 62.4 74 40.5
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 3.3e-08 62.4 73 39.7
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 4.4e-08 62.0 90 36.7
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 5.7e-08 61.6 58 46.6
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 7.5e-08 61.2 99 34.3
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 1.7e-07 60.1 65 43.1
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 3.7e-07 58.9 91 41.8
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 3.7e-07 58.9 52 48.1
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 3.7e-07 58.9 87 35.6
Oeu064700.1 Olea europaea HOM05D005992 ORTHO05D007476 3.7e-07 58.9 99 33.3
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 4.8e-07 58.5 74 37.8
Actinidia23817 Actinidia chinensis HOM05D005992 ORTHO05D007476 1.1e-06 57.4 76 35.5
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 1.4e-06 57.0 86 38.4
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 3.1e-06 55.8 156 28.2
Aqoxy4G02934 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 5.3e-06 55.1 41 51.2
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 7.0e-06 54.7 55 49.1


User provided reference genes

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