Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.6e-297 1025.4 547 100.0
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 1.2e-284 982.6 548 92.7
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 1.6e-281 972.2 547 91.0
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 2.3e-275 951.8 548 91.2
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 8.9e-272 939.9 549 91.6
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 2.9e-270 934.9 553 91.9
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.1e-256 889.8 553 84.4
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 3.3e-234 815.1 560 79.1
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 1.4e-229 799.7 562 79.5
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 2.5e-229 798.9 562 79.5
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 2.5e-229 798.9 562 79.5
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 4.3e-226 788.1 561 81.1
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 2.8e-225 785.4 561 80.7
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 6.3e-201 704.5 577 69.2
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 5.0e-198 694.9 561 69.5
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 7.7e-183 644.4 553 65.3
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 8.8e-179 630.9 568 63.0
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 1.7e-177 626.7 569 62.2
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 1.1e-176 624.0 570 61.4
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 1.1e-176 624.0 571 63.7
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 2.4e-176 622.9 573 63.0
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 4.1e-176 622.1 571 60.6
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 7.0e-176 621.3 571 63.0
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 7.0e-176 621.3 571 63.0
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 1.2e-175 620.5 575 62.1
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.2e-175 620.5 575 63.0
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 1.2e-175 620.5 569 60.6
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 2.0e-175 619.8 570 61.6
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 1.7e-174 616.7 571 61.5
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 2.9e-174 615.9 571 62.0
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.9e-174 615.9 572 62.1
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 8.6e-174 614.4 570 60.9
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 6.1e-172 608.2 568 60.4
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 6.1e-172 608.2 570 60.9
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 8.0e-172 607.8 570 61.6
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 3.0e-171 605.9 570 61.4
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 1.2e-170 604.0 580 59.5
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 5.7e-170 601.7 570 61.6
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 1.3e-169 600.5 570 61.4
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.2e-168 595.9 568 60.7
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 4.1e-168 595.5 574 59.2
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 7.0e-168 594.7 567 60.5
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 7.0e-168 594.7 567 60.5
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 2.7e-167 592.8 554 59.4
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 3.3e-165 585.9 573 58.8
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 5.6e-165 585.1 570 60.0
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 5.8e-162 575.1 571 57.3
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.9e-161 572.8 569 57.1
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 3.7e-161 572.4 564 57.8
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 4.9e-161 572.0 573 58.3
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 6.4e-161 571.6 579 58.7
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.2e-160 569.3 551 58.1
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 1.6e-159 567.0 572 58.4
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 2.7e-159 566.2 564 56.2
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 7.8e-159 564.7 564 56.4
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 1.3e-158 563.9 574 58.4
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 2.3e-158 563.1 579 58.5
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 5.0e-158 562.0 553 58.4
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 5.0e-158 562.0 620 53.4
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 6.6e-158 561.6 557 59.1
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 6.6e-158 561.6 564 58.3
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 1.9e-157 560.1 554 56.9
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 1.9e-157 560.1 568 58.5
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 4.3e-157 558.9 561 58.5
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.2e-156 557.4 563 57.2
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 2.1e-156 556.6 639 53.2
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 2.8e-156 556.2 561 57.4
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 4.7e-156 555.4 556 58.5
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 8.1e-156 554.7 572 57.9
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.1e-155 554.3 527 58.8
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 2.3e-155 553.1 565 59.6
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 5.2e-155 552.0 621 54.3
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 1.5e-154 550.4 571 57.4
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 3.4e-154 549.3 563 56.5
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 3.4e-154 549.3 562 56.9
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 9.8e-154 547.7 568 56.2
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 1.7e-153 547.0 550 59.1
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 4.9e-153 545.4 569 55.9
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 8.3e-153 544.7 573 55.1
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 1.3e-150 537.3 568 57.4
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.7e-150 537.0 581 55.1
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 5.1e-150 535.4 566 57.6
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 2.5e-149 533.1 581 54.7
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 1.6e-148 530.4 566 57.4
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.4e-147 527.3 557 57.1
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 8.9e-147 524.6 556 58.1
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.5e-146 523.9 586 53.4
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 3.4e-146 522.7 594 53.4
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 4.4e-146 522.3 586 53.6
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 4.4e-146 522.3 558 55.0
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.7e-145 520.4 513 58.3
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 3.8e-145 519.2 581 54.4
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 1.9e-144 516.9 574 55.4
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 5.1e-142 508.8 566 53.2
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 2.0e-138 496.9 550 52.5
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 4.4e-138 495.7 481 59.9
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 4.9e-137 492.3 707 45.5
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.2e-136 489.6 707 46.0
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 4.6e-135 485.7 522 55.9
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 4.3e-133 479.2 591 50.1
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 7.3e-133 478.4 655 48.2
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 1.8e-131 473.8 561 51.3
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 3.4e-130 469.5 556 52.7
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 3.5e-127 459.5 464 58.8
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 1.9e-125 453.8 477 55.6
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 3.2e-120 436.4 567 48.5
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 1.1e-117 427.9 553 49.7
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 7.4e-117 425.2 579 47.8
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 4.8e-116 422.5 434 57.6
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 3.1e-115 419.9 547 46.3
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 1.8e-110 404.1 374 60.2
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 3.0e-110 403.3 524 50.6
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 9.0e-107 391.7 593 43.7
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 5.5e-104 382.5 418 55.5
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.1e-91 341.7 397 49.4
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 2.3e-86 323.9 551 41.7
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 7.2e-80 302.4 544 39.3
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 5.2e-70 269.6 352 44.6
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 1.6e-63 248.1 502 37.6
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 1.1e-59 235.3 318 50.3
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 1.1e-46 192.2 272 42.3
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 5.8e-37 159.8 403 35.2
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 1.2e-26 125.6 88 69.3
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 6.6e-25 119.8 159 52.2
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 8.6e-25 119.4 86 65.1
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 4.3e-24 117.1 113 54.9
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 2.4e-22 111.3 86 64.0
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.7e-18 97.8 234 33.3
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 2.7e-18 97.8 238 29.4
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 6.6e-17 93.2 238 29.0
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 1.1e-16 92.4 166 31.3
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 6.9e-14 83.2 85 54.1
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.6e-13 81.3 197 28.9


User provided reference genes

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