Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.3e-52 209.5 116 100.0
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 7.4e-51 203.8 116 96.6
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 3.1e-49 198.4 116 94.0
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 5.9e-48 194.1 116 93.1
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 5.9e-48 194.1 116 92.2
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 7.7e-48 193.7 116 92.2
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 8.5e-47 190.3 116 91.4
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 1.4e-46 189.5 116 90.5
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 1.4e-46 189.5 116 90.5
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 1.4e-46 189.5 116 90.5
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 1.4e-46 189.5 116 90.5
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 2.5e-46 188.7 116 88.8
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 5.5e-46 187.6 116 91.4
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 9.4e-46 186.8 116 89.7
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 6.1e-45 184.1 116 87.9
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 7.9e-45 183.7 117 89.7
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 2.3e-44 182.2 115 87.0
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 1.1e-35 153.3 110 79.1
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 1.1e-35 153.3 110 79.1
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 1.1e-35 153.3 110 78.2
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 1.5e-35 152.9 110 78.2
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 1.5e-35 152.9 110 77.3
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 2.0e-35 152.5 110 77.3
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 2.0e-35 152.5 110 78.2
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 3.3e-35 151.8 110 76.4
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 3.3e-35 151.8 110 76.4
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 3.3e-35 151.8 110 76.4
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 3.3e-35 151.8 110 75.5
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 4.4e-35 151.4 110 78.2
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 4.4e-35 151.4 110 78.2
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 4.4e-35 151.4 110 78.2
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 5.7e-35 151.0 110 79.1
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 5.7e-35 151.0 110 79.1
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 5.7e-35 151.0 110 79.1
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 9.7e-35 150.2 101 80.2
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 9.7e-35 150.2 110 76.4
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 1.7e-34 149.4 110 77.3
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.7e-34 149.4 110 77.3
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.7e-34 149.4 110 77.3
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 1.7e-34 149.4 110 77.3
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 1.7e-34 149.4 110 77.3
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 2.2e-34 149.1 107 76.6
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.8e-34 148.7 110 74.5
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 2.8e-34 148.7 110 78.2
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 2.8e-34 148.7 110 77.3
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.8e-34 148.7 107 76.6
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 3.7e-34 148.3 110 77.3
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.8e-34 147.9 110 76.4
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.8e-34 147.9 110 76.4
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.8e-34 147.9 110 76.4
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 4.8e-34 147.9 107 77.6
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 4.8e-34 147.9 110 75.5
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 6.3e-34 147.5 110 74.5
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 6.3e-34 147.5 107 76.6
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 6.3e-34 147.5 111 75.7
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 6.3e-34 147.5 111 75.7
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 6.3e-34 147.5 111 76.6
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 1.1e-33 146.7 110 74.5
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 1.1e-33 146.7 110 74.5
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 1.1e-33 146.7 108 75.9
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 1.1e-33 146.7 110 76.4
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.4e-33 146.4 107 76.6
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.4e-33 146.4 107 76.6
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 1.4e-33 146.4 110 73.6
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 1.8e-33 146.0 110 75.5
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 1.8e-33 146.0 110 73.6
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 1.8e-33 146.0 110 77.3
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 2.4e-33 145.6 110 73.6
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.4e-33 145.6 110 73.6
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 2.4e-33 145.6 107 75.7
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 2.4e-33 145.6 110 76.4
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 3.1e-33 145.2 105 78.1
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 3.1e-33 145.2 99 79.8
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 5.3e-33 144.4 110 74.5
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 7.0e-33 144.1 107 76.6
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 7.0e-33 144.1 107 76.6
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 7.0e-33 144.1 110 75.5
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 9.1e-33 143.7 106 76.4
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 9.1e-33 143.7 111 73.9
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 1.2e-32 143.3 110 72.7
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 1.5e-32 142.9 110 73.6
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 2.0e-32 142.5 111 73.0
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 2.0e-32 142.5 99 78.8
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 2.0e-32 142.5 110 72.7
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 2.0e-32 142.5 110 74.5
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 2.0e-32 142.5 110 72.7
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 2.0e-32 142.5 110 75.5
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 2.6e-32 142.1 110 74.5
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 3.5e-32 141.7 108 74.1
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 3.5e-32 141.7 110 71.8
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 4.5e-32 141.4 110 73.6
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 5.9e-32 141.0 110 75.5
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 5.9e-32 141.0 110 75.5
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 5.9e-32 141.0 110 73.6
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 7.7e-32 140.6 116 73.3
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 1.0e-31 140.2 110 72.7
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.0e-31 140.2 110 74.5
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 1.0e-31 140.2 105 74.3
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.9e-31 138.7 108 73.1
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 3.8e-31 138.3 110 70.9
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 3.8e-31 138.3 110 70.9
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 6.5e-31 137.5 110 71.8
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 6.5e-31 137.5 106 72.6
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 8.5e-31 137.1 97 78.4
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 8.5e-31 137.1 108 72.2
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 1.1e-30 136.7 110 71.8
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 7.2e-30 134.0 123 66.7
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 2.1e-29 132.5 110 71.8
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 4.7e-29 131.3 110 70.0
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 6.1e-29 131.0 132 62.1
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 1.8e-28 129.4 107 69.2
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 3.0e-28 128.6 110 67.3
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 3.0e-28 128.6 110 70.0
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 3.9e-28 128.3 106 68.9
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 6.7e-28 127.5 110 63.6
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 8.8e-28 127.1 99 70.7
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.1e-27 126.7 100 67.0
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 4.4e-27 124.8 100 72.0
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 4.4e-27 124.8 110 64.5
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 1.3e-26 123.2 110 66.4
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.3e-26 123.2 113 69.0
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 2.8e-26 122.1 111 64.0
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 8.2e-26 120.6 108 66.7
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 1.1e-25 120.2 107 64.5
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.1e-25 120.2 110 64.5
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 3.5e-24 115.2 98 64.3
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 4.5e-24 114.8 94 69.1
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 4.5e-24 114.8 84 78.6
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 5.0e-23 111.3 108 63.0
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 8.5e-23 110.5 111 58.6
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 4.2e-22 108.2 180 45.0
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.7e-21 104.8 108 61.1
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 8.0e-21 104.0 62 93.5
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 2.0e-19 99.4 109 60.6
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.0e-16 89.4 66 74.2
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 8.5e-15 84.0 88 59.1
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 1.5e-14 83.2 63 74.6
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 5.5e-14 81.3 60 76.7
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 5.5e-14 81.3 63 77.8
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 6.1e-13 77.8 108 50.0
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 5.7e-11 71.2 59 67.8
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 1.3e-10 70.1 49 71.4
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 6.3e-10 67.8 53 73.6
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 6.3e-10 67.8 48 70.8


User provided reference genes

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