Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.2e-60 235.3 109 100.0
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 5.3e-59 230.7 109 97.2
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 6.9e-59 230.3 109 97.2
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 2.6e-58 228.4 109 96.3
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.2e-56 221.1 107 94.4
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 6.1e-55 217.2 107 93.5
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.5e-53 212.6 106 90.6
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 90.6
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.0e-53 212.2 106 90.6
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 2.6e-53 211.8 104 92.3
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 3.3e-53 211.5 106 89.6
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 3.3e-53 211.5 106 89.6
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 3.3e-53 211.5 106 89.6
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 3.3e-53 211.5 106 89.6
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 3.3e-53 211.5 106 89.6
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 3.3e-53 211.5 106 89.6
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 3.3e-53 211.5 106 89.6
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 3.3e-53 211.5 106 89.6
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 3.3e-53 211.5 106 89.6
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 4.4e-53 211.1 106 89.6
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 4.4e-53 211.1 106 89.6
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 4.4e-53 211.1 106 89.6
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 9.7e-53 209.9 106 88.7
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 1.3e-52 209.5 106 87.7
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 2.2e-52 208.8 105 89.5
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 3.7e-52 208.0 106 86.8
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 3.7e-52 208.0 106 86.8
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 6.3e-52 207.2 103 89.3
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 9.1e-51 203.4 105 86.7
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 4.5e-50 201.1 101 89.1
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 4.5e-50 201.1 101 89.1
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.3e-49 199.5 105 84.8
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 3.8e-49 198.0 107 83.2
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 1.4e-48 196.1 105 82.9
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.5e-48 195.3 107 81.3
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 3.2e-48 194.9 105 81.9
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 9.4e-48 193.4 105 82.9
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.2e-47 193.0 107 80.4
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 1.6e-47 192.6 107 81.3
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.6e-47 192.6 103 83.5
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 3.6e-47 191.4 105 80.0
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 6.1e-47 190.7 106 78.3
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.0e-46 189.9 105 80.0
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.0e-46 189.9 106 77.4
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.4e-46 189.5 105 80.0
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 5.2e-46 187.6 105 80.0
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 6.7e-46 187.2 107 79.4
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 8.8e-46 186.8 105 81.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.1e-45 186.4 105 80.0
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 1.1e-45 186.4 106 79.2
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.1e-45 186.4 107 79.4
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.1e-45 186.4 103 81.6
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 1.1e-45 186.4 101 83.2
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 1.5e-45 186.0 105 79.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 2.0e-45 185.7 105 78.1
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 2.0e-45 185.7 102 80.4
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 4.4e-45 184.5 109 74.3
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 5.7e-45 184.1 105 79.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 5.7e-45 184.1 105 76.2
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 9.7e-45 183.3 103 79.6
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 9.7e-45 183.3 107 77.6
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 9.7e-45 183.3 102 79.4
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 9.7e-45 183.3 105 80.0
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 1.3e-44 183.0 104 78.8
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.7e-44 182.6 105 74.3
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.7e-44 182.6 105 77.1
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 3.7e-44 181.4 105 76.2
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 3.7e-44 181.4 103 78.6
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 4.8e-44 181.0 101 79.2
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.8e-44 181.0 105 79.0
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.8e-44 181.0 105 79.0
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 4.8e-44 181.0 103 79.6
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 6.3e-44 180.6 106 74.5
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 8.2e-44 180.3 105 75.2
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 75.2
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 78.1
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 78.1
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 78.1
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.1e-43 179.9 105 79.0
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 1.1e-43 179.9 103 79.6
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 1.4e-43 179.5 103 79.6
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.4e-43 179.5 107 75.7
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.8e-43 179.1 101 80.2
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 76.2
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 2.4e-43 178.7 105 72.4
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 2.4e-43 178.7 107 76.6
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.1e-43 178.3 101 77.2
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.1e-43 178.3 106 74.5
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 3.1e-43 178.3 105 75.2
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.1e-43 177.9 106 73.6
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 4.1e-43 177.9 105 76.2
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 4.1e-43 177.9 105 71.4
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 5.3e-43 177.6 109 75.2
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.3e-43 177.6 103 75.7
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.3e-43 177.6 103 75.7
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 9.1e-43 176.8 109 74.3
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.2e-42 176.4 103 75.7
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.6e-42 176.0 104 74.0
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 2.0e-42 175.6 102 74.5
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 2.6e-42 175.3 102 75.5
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.6e-42 175.3 101 76.2
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.6e-42 175.3 101 77.2
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 2.6e-42 175.3 103 74.8
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 2.6e-42 175.3 103 74.8
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 3.5e-42 174.9 106 70.8
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 3.5e-42 174.9 105 72.4
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 3.5e-42 174.9 105 74.3
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.5e-42 174.5 103 73.8
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.9e-42 174.1 102 74.5
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 5.9e-42 174.1 103 74.8
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 7.7e-42 173.7 103 72.8
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.0e-41 173.3 101 76.2
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.0e-41 173.3 111 68.5
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.3e-41 172.9 103 76.7
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 72.4
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 2.9e-41 171.8 105 72.4
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.8e-41 171.4 103 72.8
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 5.0e-41 171.0 103 70.9
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 5.0e-41 171.0 105 71.4
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 6.5e-41 170.6 103 73.8
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 8.5e-41 170.2 103 72.8
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 8.5e-41 170.2 103 71.8
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 8.5e-41 170.2 102 75.5
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.1e-40 169.9 109 71.6
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.1e-40 169.9 103 72.8
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.5e-40 169.5 103 69.9
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.5e-40 169.5 103 72.8
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.5e-40 169.5 97 75.3
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.2e-40 168.3 108 72.2
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 5.5e-40 167.5 103 71.8
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 7.2e-40 167.2 104 72.1
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 1.2e-39 166.4 100 77.0
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 2.1e-39 165.6 100 76.0
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 3.6e-39 164.9 106 69.8
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 3.6e-39 164.9 103 69.9
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 8.0e-39 163.7 101 70.3
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.3e-38 162.2 107 68.2
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 3.0e-38 161.8 97 72.2
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 4.0e-38 161.4 96 70.8
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 6.7e-38 160.6 105 66.7
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 8.8e-38 160.2 86 80.2
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 2.0e-37 159.1 101 68.3
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 3.3e-37 158.3 102 67.6
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 5.7e-37 157.5 88 77.3
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 5.7e-37 157.5 97 68.0
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.7e-36 156.0 172 48.8
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 4.1e-35 151.4 85 80.0
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.2e-34 149.8 79 84.8
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.0e-33 146.7 105 61.9
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.5e-32 142.1 94 63.8
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 7.2e-32 140.6 97 60.8
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 1.2e-31 139.8 95 62.1
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 8.0e-31 137.1 103 59.2
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 4.0e-30 134.8 76 73.7
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 2.2e-28 129.0 72 73.6
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 4.8e-28 127.9 103 57.3
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 4.1e-27 124.8 78 70.5
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 6.5e-25 117.5 99 47.5
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 6.1e-23 110.9 69 73.9
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.2e-21 106.7 61 80.3
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 4.4e-21 104.8 92 48.9
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 4.4e-21 104.8 71 67.6
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 3.5e-18 95.1 59 72.9
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 1.0e-17 93.6 61 67.2
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 1.3e-17 93.2 65 63.1
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 5.0e-17 91.3 90 43.3
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 2.5e-16 89.0 67 61.2
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 4.3e-16 88.2 65 66.2
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.1e-15 85.9 55 65.5
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 2.1e-15 85.9 54 68.5
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 2.8e-15 85.5 57 66.7
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 6.1e-15 84.3 41 82.9
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 8.0e-15 84.0 59 67.8
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 1.0e-14 83.6 61 62.3
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 1.0e-14 83.6 44 84.1
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 6.8e-14 80.9 52 65.4
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 1.5e-13 79.7 61 62.3
Cfa025682 Carpinus fangiana HOM05D004069 ORTHO05D122540 2.1e-07 59.3 92 34.8


User provided reference genes

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