Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G17230 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 2.4e-145 518.8 266 100.0
AL3G17210 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 2.1e-53 213.4 249 45.8
BolC5t34750H Brassica oleracea HOM05D009118 ORTHO05D011494 7.9e-48 194.9 224 46.0
AL1G13260 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 6.1e-32 142.1 227 38.8
BcaC05g29804 Brassica carinata HOM05D009118 ORTHO05D011494 3.0e-31 139.8 177 44.1
A10p02270 Brassica napus HOM05D009118 ORTHO05D011494 2.5e-30 136.7 223 35.9
C05p60950 Brassica napus HOM05D009118 ORTHO05D011494 4.1e-28 129.4 224 33.5
Thhalv10009679m.g Eutrema salsugineum HOM05D009118 ORTHO05D011494 2.1e-24 117.1 188 31.9
BraA10t42493Z Brassica rapa HOM05D009118 ORTHO05D011494 2.7e-24 116.7 195 35.9
BolC5t34839H Brassica oleracea HOM05D017090 ORTHO05D018449 3.9e-23 112.8 250 31.2
AT5G17080 Arabidopsis thaliana HOM05D009118 ORTHO05D011494 2.8e-21 106.7 224 30.8
AT1G03720 Arabidopsis thaliana HOM05D009118 ORTHO05D011494 6.3e-21 105.5 192 33.9
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 3.4e-19 99.8 195 33.8
AL6G28100 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 5.0e-18 95.9 226 30.5
CARHR079810 Cardamine hirsuta HOM05D017090 ORTHO05D018449 1.9e-17 94.0 219 29.2
BcaB02g06908 Brassica carinata HOM05D009118 ORTHO05D011494 5.5e-17 92.4 259 28.6
BcaB01g04957 Brassica carinata HOM05D009118 ORTHO05D011494 9.4e-17 91.7 241 30.3
Rhsim01G0028800 Rhododendron simsii HOM05D000069 ORTHO05D011390 1.2e-16 91.3 219 28.8
BolC3t13438H Brassica oleracea HOM05D009118 ORTHO05D011494 6.1e-16 89.0 227 30.0
BcaB01g04959 Brassica carinata HOM05D009118 ORTHO05D011494 1.4e-15 87.8 223 28.3
Carub.0006s1526 Capsella rubella HOM05D009118 ORTHO05D011494 1.8e-15 87.4 225 28.0
BraA09t35928Z Brassica rapa HOM05D022762 ORTHO05D023703 2.3e-15 87.0 218 29.8
BolC3t13443H Brassica oleracea HOM05D009118 ORTHO05D011494 3.9e-15 86.3 196 30.6
BolC3t13441H Brassica oleracea HOM05D009118 ORTHO05D011494 5.2e-15 85.9 224 29.9
vmacro11318 Vaccinium macrocarpon HOM05D000474 ORTHO05D006736 3.3e-14 83.2 240 29.6
BcaC05g30122 Brassica carinata HOM05D017090 ORTHO05D018449 7.4e-14 82.0 246 28.0
BcaB01g05231 Brassica carinata HOM05D009118 ORTHO05D011494 2.8e-13 80.1 220 28.6
C03p09400 Brassica napus HOM05D009118 ORTHO05D011494 2.8e-13 80.1 220 28.6
Carub.0007s2682 Capsella rubella HOM05D000069 ORTHO05D015385 4.5e-11 72.8 210 27.6
C08p14910 Brassica napus HOM05D009118 ORTHO05D011494 1.0e-10 71.6 85 42.4
Atru.chr10.1688 Acer truncatum HOM05D000069 ORTHO05D000060 1.3e-10 71.2 207 30.0
AL304U10040 Arabidopsis lyrata HOM05D017090 ORTHO05D018449 1.7e-10 70.9 157 29.3
Atru.chr10.1685 Acer truncatum HOM05D000069 ORTHO05D000060 2.2e-10 70.5 207 30.0
AL6G28180 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 3.8e-10 69.7 86 39.5
THA.LOC104809074 Tarenaya hassleriana HOM05D000069 ORTHO05D025459 5.0e-10 69.3 216 29.2
AT5G17140 Arabidopsis thaliana HOM05D009118 ORTHO05D011494 2.5e-09 67.0 89 39.3
THA.LOC104801556 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 5.5e-09 65.9 195 28.2
BolC3t13434H Brassica oleracea HOM05D009118 ORTHO05D011494 7.2e-09 65.5 134 32.1
THA.LOC104822513 Tarenaya hassleriana HOM05D000069 ORTHO05D015385 7.2e-09 65.5 200 24.5
CiPaw.09G138300 Carya illinoinensis HOM05D000069 ORTHO05D000060 2.1e-08 63.9 191 27.2
Solyc03g006210.2 Solanum lycopersicum HOM05D000069 ORTHO05D000060 2.1e-08 63.9 200 24.5
arahy.Tifrunner.gnm1.ann1.JV6CK5 Arachis hypogaea HOM05D000069 ORTHO05D000060 2.7e-08 63.5 186 25.8
Sopen03g002220 Solanum pennellii HOM05D000069 ORTHO05D000060 2.7e-08 63.5 200 24.5
arahy.Tifrunner.gnm1.ann1.6D8LM1 Arachis hypogaea HOM05D000069 ORTHO05D000060 3.6e-08 63.2 186 25.3
Cc06_g16770 Coffea canephora HOM05D000069 ORTHO05D000060 3.6e-08 63.2 198 24.7
MD13G1105500 Malus domestica HOM05D000069 ORTHO05D000060 4.7e-08 62.8 226 24.3
Prupe.1G240900 Prunus persica HOM05D000069 ORTHO05D000060 4.7e-08 62.8 224 25.4
THA.LOC104801561 Tarenaya hassleriana HOM05D009118 ORTHO05D011494 4.7e-08 62.8 185 30.8
CAN.G1286.1 Capsicum annuum HOM05D000069 ORTHO05D000060 6.1e-08 62.4 192 26.0
Cc06_g16760 Coffea canephora HOM05D000069 ORTHO05D000060 1.0e-07 61.6 198 24.2
COL.COLO4_08083 Corchorus olitorius HOM05D000069 ORTHO05D011390 1.4e-07 61.2 83 33.7
Medtr2g067560 Medicago truncatula HOM05D000069 ORTHO05D048850 1.4e-07 61.2 190 27.4
Nitab4.5_0002076g0130 Nicotiana tabacum HOM05D000069 ORTHO05D000060 1.4e-07 61.2 218 23.9
Nitab4.5_0007975g0030 Nicotiana tabacum HOM05D000069 ORTHO05D000060 1.4e-07 61.2 224 24.1
QL10p030265 Quercus lobata HOM05D000069 ORTHO05D011390 1.4e-07 61.2 191 26.7
Duzib168G1950 Durio zibethinus HOM05D000069 ORTHO05D011390 2.3e-07 60.5 192 26.6
PGSC0003DMG400004380 Solanum tuberosum HOM05D000069 ORTHO05D000060 2.3e-07 60.5 200 25.0
CAN.G2968.2 Capsicum annuum HOM05D000069 ORTHO05D000060 3.0e-07 60.1 220 25.0
Nn1g04473 Nelumbo nucifera HOM05D000069 ORTHO05D008115 3.0e-07 60.1 200 28.0
Ciclev10031938m.g Citrus clementina HOM05D000069 ORTHO05D000060 4.0e-07 59.7 207 27.1
MD05G1302800 Malus domestica HOM05D000069 ORTHO05D000060 4.0e-07 59.7 208 26.0
Sopen02g021660 Solanum pennellii HOM05D000069 ORTHO05D008115 4.0e-07 59.7 222 25.7
PGSC0003DMG400010215 Solanum tuberosum HOM05D000069 ORTHO05D000060 4.0e-07 59.7 203 24.6
QL10p029934 Quercus lobata HOM05D000069 ORTHO05D011390 5.2e-07 59.3 138 29.0
AL5G33890 Arabidopsis lyrata HOM05D012115 ORTHO05D011862 6.7e-07 58.9 179 26.8
PGSC0003DMG400010236 Solanum tuberosum HOM05D000069 ORTHO05D008115 6.7e-07 58.9 222 25.7
ECA247G1323 Erigeron canadensis HOM05D000069 ORTHO05D002266 8.8e-07 58.5 216 25.9
Phvul.011G127300 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 8.8e-07 58.5 186 24.7
Rhsim08G0120700 Rhododendron simsii HOM05D030015 ORTHO05D000060 8.8e-07 58.5 225 22.7
Solyc02g076750.3 Solanum lycopersicum HOM05D000069 ORTHO05D008115 8.8e-07 58.5 207 25.6
Glyma.06G273700 Glycine max HOM05D000069 ORTHO05D000060 1.2e-06 58.2 201 24.9
QL03p056236 Quercus lobata HOM05D000069 ORTHO05D000060 1.2e-06 58.2 203 23.6
Os09g0564200 Oryza sativa ssp. japonica HOM05D000069 ORTHO05D000060 1.5e-06 57.8 89 31.5
AL304U10020 Arabidopsis lyrata HOM05D017090 ORTHO05D018449 2.0e-06 57.4 205 26.3
COL.COLO4_26598 Corchorus olitorius HOM05D000069 ORTHO05D011390 2.0e-06 57.4 161 26.1
Lsat_1_v5_gn_0_16701 Lactuca sativa HOM05D000069 ORTHO05D000060 2.0e-06 57.4 79 35.4
Nitab4.5_0003322g0020 Nicotiana tabacum HOM05D000069 ORTHO05D000060 2.0e-06 57.4 217 25.8
Zm00001eb110440 Zea mays HOM05D000069 ORTHO05D025995 2.0e-06 57.4 92 31.5
CAN.G660.16 Capsicum annuum HOM05D000069 ORTHO05D000060 2.6e-06 57.0 220 24.1
Nitab4.5_0003322g0050 Nicotiana tabacum HOM05D000069 ORTHO05D000060 2.6e-06 57.0 219 25.1
Peaxi162Scf00483g00321 Petunia axillaris HOM05D000069 ORTHO05D000060 2.6e-06 57.0 106 26.4
Peaxi162Scf00483g00510 Petunia axillaris HOM05D000069 ORTHO05D000060 2.6e-06 57.0 106 26.4
Peaxi162Scf01342g00005 Petunia axillaris HOM05D000069 ORTHO05D000060 2.6e-06 57.0 106 26.4
VMungo1127G0925 Vigna mungo HOM05D000069 ORTHO05D000060 2.6e-06 57.0 205 24.4
COL.COLO4_23525 Corchorus olitorius HOM05D000069 ORTHO05D000060 3.3e-06 56.6 223 25.1
Glyma.06G272800 Glycine max HOM05D000069 ORTHO05D000060 3.3e-06 56.6 201 24.4
Lalb_Chr08g0236901 Lupinus albus HOM05D000069 ORTHO05D000060 3.3e-06 56.6 214 22.0
PGR042G1099 Punica granatum HOM05D000069 ORTHO05D000060 3.3e-06 56.6 217 23.0
CDE10G1200 Ceratophyllum demersum HOM05D000718 ORTHO05D003905 4.4e-06 56.2 203 27.1
Glyma.06G275300 Glycine max HOM05D000069 ORTHO05D000060 4.4e-06 56.2 186 24.2
MBI10_g16719_MAGBIO Magnolia biondii HOM05D000069 ORTHO05D000060 4.4e-06 56.2 192 22.9
BcaB01g00823 Brassica carinata HOM05D000069 ORTHO05D000060 5.7e-06 55.8 206 22.8
CARHR157120 Cardamine hirsuta HOM05D000069 ORTHO05D000060 5.7e-06 55.8 202 21.8
FAN11G1926 Fragaria x ananassa HOM05D000069 ORTHO05D000060 5.7e-06 55.8 224 24.1
Nn8g39684 Nelumbo nucifera HOM05D000069 ORTHO05D011441 5.7e-06 55.8 76 35.5
Carub.0005s1452 Capsella rubella HOM05D000069 ORTHO05D000060 7.5e-06 55.5 202 23.3
FAN04G2507 Fragaria x ananassa HOM05D000069 ORTHO05D000060 7.5e-06 55.5 202 22.8
FAN16G3198 Fragaria x ananassa HOM05D000069 ORTHO05D000060 7.5e-06 55.5 223 23.3
Manes.13G139350 Manihot esculenta HOM05D000069 ORTHO05D036641 7.5e-06 55.5 82 31.7
Haze_14177 Corylus avellana HOM05D000072 ORTHO05D000026 9.7e-06 55.1 194 23.7
MD16G1032300 Malus domestica HOM05D000069 ORTHO05D000060 9.7e-06 55.1 204 24.5
THA.LOC104811610 Tarenaya hassleriana HOM05D000069 ORTHO05D000060 9.7e-06 55.1 201 23.9


User provided reference genes

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