Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G17210 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 9.5e-153 543.5 281 100.0
BolC5t34750H Brassica oleracea HOM05D009118 ORTHO05D011494 1.2e-67 260.8 220 60.5
AL3G17230 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 5.0e-53 212.2 249 45.8
C05p60950 Brassica napus HOM05D009118 ORTHO05D011494 6.0e-46 188.7 220 48.2
BcaC05g29804 Brassica carinata HOM05D009118 ORTHO05D011494 7.8e-46 188.3 175 54.3
AL1G13260 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 1.6e-27 127.5 258 34.1
A10p02270 Brassica napus HOM05D009118 ORTHO05D011494 7.6e-25 118.6 219 32.4
AT5G17080 Arabidopsis thaliana HOM05D009118 ORTHO05D011494 4.9e-24 115.9 235 33.6
AT1G03720 Arabidopsis thaliana HOM05D009118 ORTHO05D011494 5.4e-23 112.5 190 34.2
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.2e-22 111.3 196 33.2
BraA10t42493Z Brassica rapa HOM05D009118 ORTHO05D011494 5.1e-21 105.9 200 32.5
Thhalv10009679m.g Eutrema salsugineum HOM05D009118 ORTHO05D011494 8.7e-21 105.1 185 34.1
BolC5t34839H Brassica oleracea HOM05D017090 ORTHO05D018449 3.3e-20 103.2 206 31.1
BolC3t13443H Brassica oleracea HOM05D009118 ORTHO05D011494 3.1e-18 96.7 187 31.0
AL6G28100 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 9.9e-17 91.7 206 30.1
BcaB01g05231 Brassica carinata HOM05D009118 ORTHO05D011494 8.4e-16 88.6 245 29.4
C03p09400 Brassica napus HOM05D009118 ORTHO05D011494 8.4e-16 88.6 245 29.4
BolC3t13438H Brassica oleracea HOM05D009118 ORTHO05D011494 8.4e-16 88.6 241 29.5
CARHR079810 Cardamine hirsuta HOM05D017090 ORTHO05D018449 1.1e-15 88.2 219 29.2
BcaB01g04957 Brassica carinata HOM05D009118 ORTHO05D011494 1.9e-15 87.4 235 32.3
BcaB02g06908 Brassica carinata HOM05D009118 ORTHO05D011494 3.2e-15 86.7 269 30.1
BcaB01g04959 Brassica carinata HOM05D009118 ORTHO05D011494 5.4e-15 85.9 242 30.2
BolC3t13441H Brassica oleracea HOM05D009118 ORTHO05D011494 2.3e-13 80.5 244 29.1
BraA09t35928Z Brassica rapa HOM05D022762 ORTHO05D023703 3.9e-13 79.7 213 31.0
BcaC05g30122 Brassica carinata HOM05D017090 ORTHO05D018449 5.1e-13 79.3 202 27.7
C08p14910 Brassica napus HOM05D009118 ORTHO05D011494 2.5e-12 77.0 82 45.1
Rhsim01G0028800 Rhododendron simsii HOM05D000069 ORTHO05D011390 7.4e-12 75.5 208 26.9
THA.LOC104822513 Tarenaya hassleriana HOM05D000069 ORTHO05D015385 6.2e-11 72.4 203 29.1
Carub.0006s1526 Capsella rubella HOM05D009118 ORTHO05D011494 1.4e-10 71.2 249 29.3
BolC3t13434H Brassica oleracea HOM05D009118 ORTHO05D011494 2.4e-10 70.5 132 31.8
BcaB08g36117 Brassica carinata HOM05D022762 ORTHO05D023703 3.1e-10 70.1 214 29.4
BolC3t13967H Brassica oleracea HOM05D017672 ORTHO05D015385 6.9e-10 68.9 204 25.5
Nn1g04471 Nelumbo nucifera HOM05D000069 ORTHO05D008115 3.4e-09 66.6 110 30.9
AL6G28180 Arabidopsis lyrata HOM05D009118 ORTHO05D011494 5.8e-09 65.9 72 43.1
AT5G17140 Arabidopsis thaliana HOM05D009118 ORTHO05D011494 7.6e-09 65.5 72 43.1
Carub.0007s2682 Capsella rubella HOM05D000069 ORTHO05D015385 4.9e-08 62.8 203 26.1
Nn1g04473 Nelumbo nucifera HOM05D000069 ORTHO05D008115 4.9e-08 62.8 114 32.5
QL10p030265 Quercus lobata HOM05D000069 ORTHO05D011390 6.4e-08 62.4 184 29.9
Duzib168G1950 Durio zibethinus HOM05D000069 ORTHO05D011390 1.1e-07 61.6 193 27.5
THA.LOC104809074 Tarenaya hassleriana HOM05D000069 ORTHO05D025459 1.4e-07 61.2 232 27.2
BolC2t06183H Brassica oleracea HOM05D031351 ORTHO05D011862 3.2e-07 60.1 179 26.3
BcaB01g04432 Brassica carinata HOM05D017672 ORTHO05D015385 5.5e-07 59.3 206 23.3
QL10p029934 Quercus lobata HOM05D000069 ORTHO05D011390 5.5e-07 59.3 77 36.4
AUR62001249 Chenopodium quinoa HOM05D003741 ORTHO05D004247 7.1e-07 58.9 67 34.3
AUR62022081 Chenopodium quinoa HOM05D003741 ORTHO05D004247 7.1e-07 58.9 67 34.3
AL304U10020 Arabidopsis lyrata HOM05D017090 ORTHO05D018449 9.3e-07 58.5 198 23.7
FAN05G1716 Fragaria x ananassa HOM05D000069 ORTHO05D000060 9.3e-07 58.5 214 25.7
FAN05G2660 Fragaria x ananassa HOM05D000069 ORTHO05D000060 9.3e-07 58.5 214 25.7
Nn8g39684 Nelumbo nucifera HOM05D000069 ORTHO05D011441 9.3e-07 58.5 67 37.3
TPR.G11732 Trifolium pratense HOM05D000069 ORTHO05D000060 9.3e-07 58.5 77 35.1
AL5G33890 Arabidopsis lyrata HOM05D012115 ORTHO05D011862 1.2e-06 58.2 174 23.6
CiPaw.09G138300 Carya illinoinensis HOM05D000069 ORTHO05D000060 1.2e-06 58.2 209 26.8
Haze_27386 Corylus avellana HOM05D000069 ORTHO05D015629 1.2e-06 58.2 78 37.2
Glyma.15G082200 Glycine max HOM05D000069 ORTHO05D011441 1.2e-06 58.2 87 32.2
Solyc02g069110.4 Solanum lycopersicum HOM05D003741 ORTHO05D004247 1.2e-06 58.2 70 32.9
Sopen02g018240 Solanum pennellii HOM05D003741 ORTHO05D004247 1.2e-06 58.2 70 32.9
PGSC0003DMG400010362 Solanum tuberosum HOM05D003741 ORTHO05D004247 1.2e-06 58.2 70 31.4
ATR0602G143 Amborella trichopoda HOM05D000069 ORTHO05D000060 1.6e-06 57.8 223 26.5
ECA247G1323 Erigeron canadensis HOM05D000069 ORTHO05D002266 1.6e-06 57.8 94 34.0
Nitab4.5_0003773g0090 Nicotiana tabacum HOM05D001270 ORTHO05D001099 1.6e-06 57.8 83 30.1
RcHm_v2.0_Chr3g0455051 Rosa chinensis HOM05D000069 ORTHO05D000060 1.6e-06 57.8 76 39.5
RcHm_v2.0_Chr3g0455061 Rosa chinensis HOM05D000069 ORTHO05D000060 1.6e-06 57.8 76 39.5
TPR.G35903 Trifolium pratense HOM05D000069 ORTHO05D412147 1.6e-06 57.8 96 30.2
AL304U10040 Arabidopsis lyrata HOM05D017090 ORTHO05D018449 2.1e-06 57.4 187 29.4
CAN.G1222.10 Capsicum annuum HOM05D003741 ORTHO05D004247 2.7e-06 57.0 73 31.5
CAN.G1222.9 Capsicum annuum HOM05D003741 ORTHO05D004247 2.7e-06 57.0 70 35.7
Os09g0564600 Oryza sativa ssp. japonica HOM05D000069 ORTHO05D000060 2.7e-06 57.0 85 30.6
Carub.0005s1558 Capsella rubella HOM05D000069 ORTHO05D000060 3.5e-06 56.6 174 26.4
Lalb_Chr11g0073601 Lupinus albus HOM05D000069 ORTHO05D000060 3.5e-06 56.6 198 29.3
Peaxi162Scf00149g01016 Petunia axillaris HOM05D003741 ORTHO05D004247 3.5e-06 56.6 83 31.3
Hund05614 Selenicereus undatus HOM05D003741 ORTHO05D004247 3.5e-06 56.6 70 31.4
Aqoxy2G02612 Aquilegia oxysepala HOM05D003741 ORTHO05D004247 4.6e-06 56.2 70 30.0
FvH4_6g06040 Fragaria vesca HOM05D000069 ORTHO05D000060 4.6e-06 56.2 86 34.9
PSO761G0307 Papaver somniferum HOM05D003741 ORTHO05D004247 4.6e-06 56.2 70 31.4
THA.LOC104801561 Tarenaya hassleriana HOM05D009118 ORTHO05D011494 4.6e-06 56.2 194 28.9
Actinidia06418 Actinidia chinensis HOM05D003741 ORTHO05D004247 6.0e-06 55.8 70 30.0
Aa31LG5G1330 Aethionema arabicum HOM05D003741 ORTHO05D004247 6.0e-06 55.8 67 31.3
Ca_00427_v3 Cicer arietinum L. HOM05D000069 ORTHO05D000060 6.0e-06 55.8 75 33.3
Ca_30956_v3 Cicer arietinum L. HOM05D000069 ORTHO05D000060 6.0e-06 55.8 75 33.3
Cc02_g27650 Coffea canephora HOM05D003741 ORTHO05D004247 6.0e-06 55.8 70 30.0
Migut.E01493 Erythranthe guttata HOM05D009118 ORTHO05D035174 6.0e-06 55.8 72 34.7
Thhalv10021398m.g Eutrema salsugineum HOM05D021300 ORTHO05D014035 6.0e-06 55.8 217 22.6
Thhalv10028753m.g Eutrema salsugineum HOM05D003741 ORTHO05D004247 6.0e-06 55.8 67 32.8
FAN25G3149 Fragaria x ananassa HOM05D000069 ORTHO05D035725 6.0e-06 55.8 97 30.9
Gorai.009G363700 Gossypium raimondii HOM05D000069 ORTHO05D000060 6.0e-06 55.8 131 31.3
Lj1g0024084 Lotus japonicus HOM05D003741 ORTHO05D004247 6.0e-06 55.8 67 32.8
Prupe.4G059600 Prunus persica HOM05D000069 ORTHO05D000060 6.0e-06 55.8 80 33.8
Sp6g01520 Schrenkiella parvula HOM05D003741 ORTHO05D004247 6.0e-06 55.8 67 32.8
CSS0030537 Camellia sinensis var. sinensis HOM05D003741 ORTHO05D004247 7.9e-06 55.5 70 30.0
DCAR_030726 Daucus carota HOM05D003741 ORTHO05D004247 7.9e-06 55.5 80 27.5
FAN21G0208 Fragaria x ananassa HOM05D000069 ORTHO05D035725 7.9e-06 55.5 71 35.2
Lalb_Chr11g0073621 Lupinus albus HOM05D000069 ORTHO05D000060 7.9e-06 55.5 87 36.8
Nn001s41356 Nelumbo nucifera HOM05D000069 ORTHO05D011441 7.9e-06 55.5 100 31.0
Nn8g39680 Nelumbo nucifera HOM05D000069 ORTHO05D011441 7.9e-06 55.5 100 31.0
Nitab4.5_0002056g0060 Nicotiana tabacum HOM05D003741 ORTHO05D004247 7.9e-06 55.5 70 30.0
Nitab4.5_0002463g0040 Nicotiana tabacum HOM05D003741 ORTHO05D004247 7.9e-06 55.5 70 30.0
PGR042G0131 Punica granatum HOM05D003741 ORTHO05D004247 7.9e-06 55.5 80 27.5
RcHm_v2.0_Chr5g0034901 Rosa chinensis HOM05D000069 ORTHO05D000060 7.9e-06 55.5 102 29.4
TAR636G2991 Trochodendron aralioides HOM05D003741 ORTHO05D004247 7.9e-06 55.5 67 31.3


User provided reference genes

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