Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 4.5e-44 181.0 102 100.0
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 5.7e-39 164.1 101 92.1
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 5.7e-39 164.1 101 92.1
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 5.7e-39 164.1 101 92.1
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 7.5e-39 163.7 102 84.3
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 3.1e-37 158.3 101 91.1
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 2.0e-36 155.6 103 79.6
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 9.4e-34 146.7 96 89.6
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 2.7e-33 145.2 102 82.4
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 4.7e-33 144.4 101 85.1
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 4.7e-33 144.4 106 84.9
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 6.1e-33 144.1 100 85.0
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 1.8e-32 142.5 102 76.5
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 1.8e-32 142.5 102 76.5
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 1.8e-32 142.5 102 76.5
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 5.7e-31 137.5 102 80.4
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 4.8e-30 134.4 103 80.6
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 1.2e-17 93.2 102 64.7
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 2.8e-17 92.0 99 64.6
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 5.2e-16 87.8 105 56.2
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 1.3e-14 83.2 88 62.5
C09p06380 Brassica napus HOM05D007325 ORTHO05D009251 1.1e-13 80.1 87 62.1
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 1.4e-13 79.7 102 61.8
CARHR186980 Cardamine hirsuta HOM05D007325 ORTHO05D009251 1.4e-13 79.7 88 65.9
Sp2g21390 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.4e-13 79.7 102 57.8
BolC9t53557H Brassica oleracea HOM05D007325 ORTHO05D009251 2.4e-13 79.0 102 56.9
AL6G38400 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 9.2e-13 77.0 104 59.6
BcaC04g23624 Brassica carinata HOM05D007325 ORTHO05D009251 9.2e-13 77.0 87 59.8
A06p36820 Brassica napus HOM05D007325 ORTHO05D009251 1.2e-12 76.6 102 58.8
A09p05780 Brassica napus HOM05D007325 ORTHO05D009251 1.2e-12 76.6 102 56.9
BraA09t36219Z Brassica rapa HOM05D007325 ORTHO05D009251 1.2e-12 76.6 102 56.9
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 1.2e-12 76.6 105 49.5
C07p41670 Brassica napus HOM05D007325 ORTHO05D009251 1.6e-12 76.3 83 65.1
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 1.6e-12 76.3 88 51.1
AT3G05937 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 2.7e-12 75.5 54 74.1
BraA06t26608Z Brassica rapa HOM05D007325 ORTHO05D009251 2.7e-12 75.5 102 57.8
BcaNung02823 Brassica carinata HOM05D007325 ORTHO05D009251 7.8e-12 73.9 83 63.9
BolC7t44702H Brassica oleracea HOM05D007325 ORTHO05D009251 7.8e-12 73.9 83 63.9
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 1.3e-11 73.2 85 55.3
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 1.7e-11 72.8 104 49.0
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 2.3e-11 72.4 85 54.1
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 1.5e-10 69.7 85 51.8
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 2.5e-10 68.9 86 52.3
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 2.5e-10 68.9 89 49.4
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 4.3e-10 68.2 114 46.5
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 4.3e-10 68.2 88 51.1
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 5.6e-10 67.8 109 45.9
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 9.5e-10 67.0 85 62.4
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 9.5e-10 67.0 85 62.4
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 9.5e-10 67.0 85 62.4
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 9.5e-10 67.0 85 52.9
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 1.6e-09 66.2 86 50.0
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 1.6e-09 66.2 94 51.1
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 2.1e-09 65.9 91 47.3
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.1e-09 65.9 85 55.3
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 2.1e-09 65.9 88 47.7
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 2.1e-09 65.9 110 45.5
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 2.8e-09 65.5 95 48.4
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 3.6e-09 65.1 82 59.8
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 3.6e-09 65.1 80 52.5
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 6.2e-09 64.3 83 61.4
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 6.2e-09 64.3 76 48.7
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 6.2e-09 64.3 79 55.7
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 8.0e-09 63.9 102 54.9
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 8.0e-09 63.9 85 49.4
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 8.0e-09 63.9 94 48.9
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 1.1e-08 63.5 92 55.4
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 1.1e-08 63.5 74 58.1
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 1.1e-08 63.5 67 64.2
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 2.3e-08 62.4 107 42.1
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 2.3e-08 62.4 100 45.0
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 3.1e-08 62.0 78 53.8
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 6.8e-08 60.8 108 47.2
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 6.8e-08 60.8 103 45.6
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 8.9e-08 60.5 90 44.4
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 1.2e-07 60.1 89 46.1
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 1.5e-07 59.7 70 64.3
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 3.4e-07 58.5 69 52.2
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 4.4e-07 58.2 102 49.0
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 4.4e-07 58.2 69 52.2
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 7.5e-07 57.4 102 43.1
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 2.2e-06 55.8 96 51.0
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 2.2e-06 55.8 81 48.1
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 3.7e-06 55.1 69 50.7
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 4.9e-06 54.7 119 39.5
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 4.9e-06 54.7 46 58.7
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 4.9e-06 54.7 57 59.6
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 8.3e-06 53.9 45 66.7
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 8.3e-06 53.9 70 51.4
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 8.3e-06 53.9 74 48.6
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 8.3e-06 53.9 71 56.3


User provided reference genes

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