Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G16470 Arabidopsis lyrata HOM05D001135 ORTHO05D001005 4.5e-183 644.4 318 100.0
Thhalv10002069m.g Eutrema salsugineum HOM05D001135 ORTHO05D001005 2.2e-36 157.1 206 43.7
Thhalv10003428m.g Eutrema salsugineum HOM05D001135 ORTHO05D001005 7.0e-35 152.1 185 44.9
Carub.0003s0514 Capsella rubella HOM05D001135 ORTHO05D001005 1.2e-29 134.8 189 39.7
BcaC05g29781 Brassica carinata HOM05D001135 ORTHO05D001005 4.4e-29 132.9 193 38.9
BraA05t22015Z Brassica rapa HOM05D001135 ORTHO05D001005 4.4e-29 132.9 186 40.3
AL3G16510 Arabidopsis lyrata HOM05D001135 ORTHO05D001005 1.3e-28 131.3 184 39.7
BcaC08g43278 Brassica carinata HOM05D001135 ORTHO05D001005 1.3e-28 131.3 169 43.2
C06p06280 Brassica napus HOM05D001135 ORTHO05D001005 1.3e-28 131.3 169 43.2
BolC6t35737H Brassica oleracea HOM05D001135 ORTHO05D001005 1.3e-28 131.3 169 43.2
AT1G54300 Arabidopsis thaliana HOM05D001135 ORTHO05D001005 2.2e-28 130.6 187 40.6
BraA03t12603Z Brassica rapa HOM05D001135 ORTHO05D001005 2.8e-28 130.2 186 39.8
C03p41730 Brassica napus HOM05D001135 ORTHO05D001005 4.9e-28 129.4 186 39.2
BcaC05g30088 Brassica carinata HOM05D001135 ORTHO05D001005 8.3e-28 128.6 190 40.0
BolC5t34805H Brassica oleracea HOM05D001135 ORTHO05D001005 8.3e-28 128.6 190 40.0
AL6G46290 Arabidopsis lyrata HOM05D001135 ORTHO05D001005 1.1e-27 128.3 197 37.6
BcaB07g33553 Brassica carinata HOM05D001135 ORTHO05D001005 1.1e-27 128.3 188 41.0
A03p34280 Brassica napus HOM05D001135 ORTHO05D001005 1.1e-27 128.3 184 39.7
AL2G25290 Arabidopsis lyrata HOM05D001135 ORTHO05D001005 1.4e-27 127.9 175 38.9
BraA06t23479Z Brassica rapa HOM05D001135 ORTHO05D001005 1.4e-27 127.9 193 40.9
A06p02700 Brassica napus HOM05D001135 ORTHO05D001005 1.8e-27 127.5 193 40.9
BraA05t22943Z Brassica rapa HOM05D001135 ORTHO05D001005 1.2e-26 124.8 170 41.2
C05p61470 Brassica napus HOM05D001135 ORTHO05D001005 2.7e-26 123.6 189 39.7
AT3G05770 Arabidopsis thaliana HOM05D001135 ORTHO05D001005 8.6e-25 118.6 192 39.1
Thhalv10022346m.g Eutrema salsugineum HOM05D001135 ORTHO05D001005 1.3e-20 104.8 184 33.7
Rhsim05G0132100 Rhododendron simsii HOM05D001135 ORTHO05D001005 2.2e-20 104.0 206 32.0
Manes.09G176500 Manihot esculenta HOM05D001135 ORTHO05D001005 4.9e-20 102.8 208 32.2
Nitab4.5_0004873g0040 Nicotiana tabacum HOM05D001135 ORTHO05D001005 8.3e-20 102.1 155 34.8
Nitab4.5_0000368g0130 Nicotiana tabacum HOM05D001135 ORTHO05D001005 1.1e-19 101.7 155 34.8
Dinv24439 Davidia involucrata HOM05D001135 ORTHO05D001005 1.9e-19 100.9 163 34.4
Cc02_g34990 Coffea canephora HOM05D001135 ORTHO05D001005 2.4e-19 100.5 182 35.7
Cpa.g.sc48.157 Carica papaya HOM05D001135 ORTHO05D001005 7.0e-19 99.0 170 34.7
Dinv30883 Davidia involucrata HOM05D001135 ORTHO05D001005 7.0e-19 99.0 155 36.8
Peaxi162Scf00673g00315 Petunia axillaris HOM05D001135 ORTHO05D001005 9.2e-19 98.6 154 33.1
Lj5A335G21 Lonicera japonica HOM05D001135 ORTHO05D001005 3.5e-18 96.7 154 35.7
Solyc01g100440.3 Solanum lycopersicum HOM05D001135 ORTHO05D001005 3.5e-18 96.7 175 34.3
Sopen01g043960 Solanum pennellii HOM05D001135 ORTHO05D001005 4.6e-18 96.3 175 33.7
Rhsim11G0094900 Rhododendron simsii HOM05D001135 ORTHO05D001005 7.8e-18 95.5 185 31.4
QL07p032152 Quercus lobata HOM05D001135 ORTHO05D001005 1.0e-17 95.1 155 34.8
Lju926A8T17 Lonicera japonica HOM05D001135 ORTHO05D001005 2.3e-17 94.0 162 32.1
RcHm_v2.0_Chr3g0457011 Rosa chinensis HOM05D001135 ORTHO05D001005 2.3e-17 94.0 188 31.9
PGSC0003DMG400002772 Solanum tuberosum HOM05D001135 ORTHO05D001005 2.3e-17 94.0 213 29.6
Dinv32453 Davidia involucrata HOM05D001135 ORTHO05D001005 3.0e-17 93.6 168 34.5
SMO367G0916 Selaginella moellendorffii HOM05D001135 ORTHO05D001005 3.0e-17 93.6 138 34.1
SEGI_07332 Sequoiadendron giganteum HOM05D001135 ORTHO05D001005 3.0e-17 93.6 165 32.7
TWI56G0510 Tripterygium wilfordii HOM05D001135 ORTHO05D001005 5.0e-17 92.8 154 35.7
PSO063G4052 Papaver somniferum HOM05D001135 ORTHO05D001005 6.6e-17 92.4 240 32.9
TWI12G0463 Tripterygium wilfordii HOM05D001135 ORTHO05D001005 6.6e-17 92.4 157 35.0
Actinidia01511 Actinidia chinensis HOM05D001135 ORTHO05D001005 8.6e-17 92.0 158 35.4
Pp3c22_14740 Physcomitrium patens HOM05D001135 ORTHO05D001005 1.1e-16 91.7 148 36.5
AagrBONN_evm.TU.Sc2ySwM_344.3203 Anthoceros agrestis HOM05D001135 ORTHO05D001005 1.5e-16 91.3 138 34.8
Ciclev10003523m.g Citrus clementina HOM05D001135 ORTHO05D001005 1.5e-16 91.3 169 31.4
Duzib177G0882 Durio zibethinus HOM05D001135 ORTHO05D001005 1.5e-16 91.3 159 35.8
Nn3g21686 Nelumbo nucifera HOM05D001135 ORTHO05D001005 1.9e-16 90.9 223 31.8
SalBow5G4504 Salvia bowleyana HOM05D001135 ORTHO05D001005 1.9e-16 90.9 184 31.0
CiPaw.07G029400 Carya illinoinensis HOM05D001135 ORTHO05D001005 2.5e-16 90.5 175 33.1
Sabra13G0007600 Salix brachista HOM05D001135 ORTHO05D001005 2.5e-16 90.5 176 34.7
Aqoxy5G03799 Aquilegia oxysepala HOM05D001135 ORTHO05D001005 3.3e-16 90.1 175 33.1
Nn2g13267 Nelumbo nucifera HOM05D001135 ORTHO05D001005 3.3e-16 90.1 160 35.6
SalBow3G4313 Salvia bowleyana HOM05D001135 ORTHO05D001005 4.3e-16 89.7 154 33.1
SalBow5G3032 Salvia bowleyana HOM05D001135 ORTHO05D001005 4.3e-16 89.7 184 30.4
Gohir.A08G205950 Gossypium hirsutum HOM05D001135 ORTHO05D001005 5.6e-16 89.4 154 33.1
Manes.08G111600 Manihot esculenta HOM05D001135 ORTHO05D001005 5.6e-16 89.4 176 30.7
Gohir.A11G273100 Gossypium hirsutum HOM05D001135 ORTHO05D001005 7.3e-16 89.0 199 31.7
Gorai.004G236700 Gossypium raimondii HOM05D001135 ORTHO05D001005 7.3e-16 89.0 154 33.1
Lsat_1_v5_gn_9_122560 Lactuca sativa HOM05D001135 ORTHO05D001005 7.3e-16 89.0 174 29.9
SalBow5G4676 Salvia bowleyana HOM05D001135 ORTHO05D001005 7.3e-16 89.0 154 31.8
TAR622G0637 Trochodendron aralioides HOM05D001135 ORTHO05D001005 7.3e-16 89.0 164 31.7
Gohir.D08G222850 Gossypium hirsutum HOM05D001135 ORTHO05D001005 9.5e-16 88.6 154 33.1
Gorai.007G306100 Gossypium raimondii HOM05D001135 ORTHO05D001005 9.5e-16 88.6 138 37.7
Oeu041539.1 Olea europaea HOM05D001135 ORTHO05D001005 9.5e-16 88.6 164 32.3
SalBow5G4837 Salvia bowleyana HOM05D001135 ORTHO05D001005 9.5e-16 88.6 138 34.8
SalBow5G4066 Salvia bowleyana HOM05D001135 ORTHO05D001005 1.2e-15 88.2 154 33.1
CSS0005591 Camellia sinensis var. sinensis HOM05D001135 ORTHO05D001005 1.6e-15 87.8 260 26.9
AUR62005283 Chenopodium quinoa HOM05D001135 ORTHO05D001005 1.6e-15 87.8 193 30.6
SalBow5G3511 Salvia bowleyana HOM05D001135 ORTHO05D001005 1.6e-15 87.8 184 31.0
Gohir.D11G283250 Gossypium hirsutum HOM05D001135 ORTHO05D001005 2.8e-15 87.0 138 36.2
Potri.013G009000 Populus trichocarpa HOM05D001135 ORTHO05D001005 3.6e-15 86.7 210 31.4
ATR0706G113 Amborella trichopoda HOM05D014021 ORTHO05D001005 4.7e-15 86.3 161 34.8
CANSAT54G1730 Cannabis sativa HOM05D001135 ORTHO05D001005 4.7e-15 86.3 183 29.0
AUR62000670 Chenopodium quinoa HOM05D001135 ORTHO05D001005 6.2e-15 85.9 154 31.8
FvH4_6g07410 Fragaria vesca HOM05D001135 ORTHO05D001005 6.2e-15 85.9 154 32.5
FAN14G5287 Fragaria x ananassa HOM05D001135 ORTHO05D001005 6.2e-15 85.9 154 32.5
MBI19_g07240_MAGBIO Magnolia biondii HOM05D001135 ORTHO05D001005 6.2e-15 85.9 197 27.9
vmacro19790 Vaccinium macrocarpon HOM05D001135 ORTHO05D001005 6.2e-15 85.9 197 28.4
FAN09G0632 Fragaria x ananassa HOM05D001135 ORTHO05D001005 8.0e-15 85.5 185 30.8
PSO063G2732 Papaver somniferum HOM05D001135 ORTHO05D001005 8.0e-15 85.5 195 30.3
Pp3c19_16670 Physcomitrium patens HOM05D001135 ORTHO05D001005 8.0e-15 85.5 255 29.4
TAR636G1039 Trochodendron aralioides HOM05D001444 ORTHO05D003766 1.1e-14 85.1 138 32.6
Migut.B00981 Erythranthe guttata HOM05D001135 ORTHO05D001005 1.4e-14 84.7 162 30.2
FAN02G0589 Fragaria x ananassa HOM05D001135 ORTHO05D001005 1.4e-14 84.7 185 30.8
Mapoly0128s0023 Marchantia polymorpha HOM05D001135 ORTHO05D001005 1.4e-14 84.7 344 27.9
Nn4g22646 Nelumbo nucifera HOM05D001135 ORTHO05D001005 1.4e-14 84.7 162 32.1
Lsat_1_v5_gn_5_88441 Lactuca sativa HOM05D001135 ORTHO05D001005 1.8e-14 84.3 138 34.8
PSO832G3980 Papaver somniferum HOM05D001135 ORTHO05D001005 1.8e-14 84.3 206 28.2
DCAR_029353 Daucus carota HOM05D001135 ORTHO05D001005 2.3e-14 84.0 154 33.8
MELO3C015258.2 Cucumis melo HOM05D001135 ORTHO05D001005 3.1e-14 83.6 180 30.6
SEGI_09217 Sequoiadendron giganteum HOM05D001135 ORTHO05D001005 3.1e-14 83.6 138 35.5
AL6G46420 Arabidopsis lyrata HOM05D001135 ORTHO05D001005 4.0e-14 83.2 116 39.7
FAN05G3744 Fragaria x ananassa HOM05D001135 ORTHO05D001005 4.0e-14 83.2 185 30.3
SMO364G0208 Selaginella moellendorffii HOM05D001135 ORTHO05D001005 4.0e-14 83.2 139 33.1
Oeu021347.1 Olea europaea HOM05D001135 ORTHO05D001005 5.2e-14 82.8 138 37.0
SEGI_39330 Sequoiadendron giganteum HOM05D001135 ORTHO05D001005 5.2e-14 82.8 174 31.6
FAN09G3036 Fragaria x ananassa HOM05D001135 ORTHO05D001005 6.8e-14 82.4 139 35.3
Medtr4g130310 Medicago truncatula HOM05D001135 ORTHO05D001005 6.8e-14 82.4 181 31.5
Sed0008193 Sechium edule HOM05D001135 ORTHO05D001005 6.8e-14 82.4 147 28.6
CsaV3_1G038270 Cucumis sativus L. HOM05D001135 ORTHO05D001005 1.2e-13 81.6 180 30.6
Glyma.17G071300 Glycine max HOM05D001135 ORTHO05D001005 2.0e-13 80.9 216 29.2
MD09G1227700 Malus domestica HOM05D001135 ORTHO05D001005 2.0e-13 80.9 134 38.8
MD17G1226500 Malus domestica HOM05D001135 ORTHO05D001005 2.0e-13 80.9 137 35.0
Thecc.05G322500 Theobroma cacao HOM05D001135 ORTHO05D001005 2.0e-13 80.9 117 37.6
MSTRG.20388 Avicennia marina HOM05D001135 ORTHO05D001005 2.6e-13 80.5 203 28.1
CAN.G1715.2 Capsicum annuum HOM05D001135 ORTHO05D001005 2.6e-13 80.5 260 26.5
Prupe.3G103700 Prunus persica HOM05D001135 ORTHO05D001005 3.4e-13 80.1 134 38.8
HanXRQChr03g0073461 Helianthus annuus HOM05D001135 ORTHO05D001005 4.4e-13 79.7 160 30.0
MD00G1164000 Malus domestica HOM05D001135 ORTHO05D001005 5.8e-13 79.3 178 29.8
SEGI_14979 Sequoiadendron giganteum HOM05D001135 ORTHO05D001005 5.8e-13 79.3 194 31.4
FvH4_6g28260 Fragaria vesca HOM05D001135 ORTHO05D001005 7.5e-13 79.0 123 37.4
FAN14G0674 Fragaria x ananassa HOM05D001135 ORTHO05D001005 7.5e-13 79.0 123 37.4
ClCG03G017720 Citrullus lanatus HOM05D000001 ORTHO05D009952 1.3e-12 78.2 146 32.9
ECA240G2241 Erigeron canadensis HOM05D001135 ORTHO05D001005 1.3e-12 78.2 160 28.8
SHI02834 Sapria himalayana HOM05D001135 ORTHO05D001005 1.3e-12 78.2 182 31.3
FAN02G3378 Fragaria x ananassa HOM05D001135 ORTHO05D001005 1.7e-12 77.8 123 36.6
Lsat_1_v5_gn_7_74420 Lactuca sativa HOM05D001135 ORTHO05D001005 1.7e-12 77.8 160 31.9
RcHm_v2.0_Chr2g0132301 Rosa chinensis HOM05D001135 ORTHO05D001005 1.7e-12 77.8 123 37.4
FAN05G5562 Fragaria x ananassa HOM05D001135 ORTHO05D001005 2.2e-12 77.4 123 36.6
Oeu053706.1 Olea europaea HOM05D001135 ORTHO05D001005 2.2e-12 77.4 139 31.7
Sed0019058 Sechium edule HOM05D001135 ORTHO05D001005 2.9e-12 77.0 145 33.1
QL07p032011 Quercus lobata HOM05D001135 ORTHO05D001005 4.9e-12 76.3 170 31.8
Psat7g006600 Pisum sativum HOM05D001135 ORTHO05D001005 8.3e-12 75.5 187 30.5
Lj4g0006109 Lotus japonicus HOM05D001135 ORTHO05D001005 1.1e-11 75.1 238 29.0
TPR.G29220 Trifolium pratense HOM05D001135 ORTHO05D001005 1.1e-11 75.1 190 29.5
CDE02G2065 Ceratophyllum demersum HOM05D001135 ORTHO05D001005 1.4e-11 74.7 112 37.5
Hma1.2p1_1084F.1_g255290 Hydrangea macrophylla HOM05D001135 ORTHO05D001005 1.4e-11 74.7 181 31.5
MD16G1259500 Malus domestica HOM05D001135 ORTHO05D001005 1.4e-11 74.7 178 28.7
SalBow5G0572 Salvia bowleyana HOM05D001135 ORTHO05D001005 1.4e-11 74.7 141 31.9
Potri.005G014600 Populus trichocarpa HOM05D001135 ORTHO05D001005 3.2e-11 73.6 158 32.3
Lj5g0004489 Lotus japonicus HOM05D001135 ORTHO05D001005 4.1e-11 73.2 189 28.6
vmacro19751 Vaccinium macrocarpon HOM05D001135 ORTHO05D001005 4.1e-11 73.2 110 32.7
Sabra05G0011600 Salix brachista HOM05D001135 ORTHO05D001005 5.4e-11 72.8 138 34.8
TPR.G2598 Trifolium pratense HOM05D001135 ORTHO05D001005 5.4e-11 72.8 154 31.8
Sabra05G0023100 Salix brachista HOM05D001135 ORTHO05D001005 2.1e-10 70.9 138 34.8
Oeu021351.1 Olea europaea HOM05D001135 ORTHO05D001005 4.6e-10 69.7 135 31.9
MD12G1206200 Malus domestica HOM05D001135 ORTHO05D001005 7.8e-10 68.9 110 34.5
Oeu064817.1 Olea europaea HOM05D001135 ORTHO05D001005 7.8e-10 68.9 189 27.0
CSS0003421 Camellia sinensis var. sinensis HOM05D001135 ORTHO05D001005 2.3e-09 67.4 215 26.5
Ah.06g188780 Amaranthus hybridus HOM05D001135 ORTHO05D001005 3.0e-09 67.0 119 31.1
Actinidia35524 Actinidia chinensis HOM05D001135 ORTHO05D001005 3.9e-09 66.6 132 33.3
Lsat_1_v5_gn_8_46280 Lactuca sativa HOM05D001135 ORTHO05D001005 4.3e-08 63.2 139 32.4
Sabra05G0023900 Salix brachista HOM05D001135 ORTHO05D001005 4.3e-08 63.2 138 33.3
Oeu013211.1 Olea europaea HOM05D001135 ORTHO05D001005 2.8e-07 60.5 99 36.4
SEGI_11000 Sequoiadendron giganteum HOM05D001135 ORTHO05D001005 6.2e-07 59.3 83 38.6
BcaC04g19179 Brassica carinata HOM05D001518 ORTHO05D002719 8.1e-07 58.9 50 48.0


User provided reference genes

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