Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.7e-166 588.2 309 100.0
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 7.0e-64 248.4 204 61.8
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 7.5e-34 148.7 191 46.6
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 9.8e-34 148.3 223 43.9
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.1e-32 144.8 205 45.9
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 1.9e-32 144.1 162 51.2
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 2.7e-31 140.2 161 47.8
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 7.8e-31 138.7 141 54.6
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-29 134.0 202 45.5
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 5.6e-29 132.5 208 44.2
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-28 131.3 166 46.4
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 4.7e-28 129.4 227 39.2
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.9e-25 119.4 136 47.8
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 6.4e-25 119.0 205 38.5
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-24 117.1 163 40.5
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 3.2e-24 116.7 241 38.2
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.1e-24 116.3 240 35.4
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 9.2e-24 115.2 163 40.5
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 9.2e-24 115.2 163 40.5
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-23 114.4 163 39.9
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-23 114.4 163 40.5
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 2.1e-23 114.0 163 40.5
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.7e-23 113.6 198 37.4
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 2.7e-23 113.6 169 41.4
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 3.5e-23 113.2 205 36.1
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.0e-23 112.5 221 35.3
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 7.8e-23 112.1 178 38.8
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 7.8e-23 112.1 196 39.3
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 7.8e-23 112.1 156 42.3
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 1.0e-22 111.7 203 38.9
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 1.3e-22 111.3 230 35.7
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 1.7e-22 110.9 156 41.7
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 1.7e-22 110.9 163 40.5
AT3G05685 Arabidopsis thaliana HOM05D004201 ORTHO05D031360 2.3e-22 110.5 82 64.6
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 2.3e-22 110.5 159 42.1
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 2.3e-22 110.5 204 36.8
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 3.0e-22 110.2 160 44.4
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.9e-22 109.8 159 42.8
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 6.6e-22 109.0 191 38.2
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 1.1e-21 108.2 220 37.3
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 3.3e-21 106.7 160 42.5
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 4.3e-21 106.3 158 40.5
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 7.3e-21 105.5 188 37.8
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 7.3e-21 105.5 163 41.1
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-20 104.8 204 37.3
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 1.6e-20 104.4 230 34.3
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.1e-20 104.0 157 38.9
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 2.1e-20 104.0 199 38.2
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 2.8e-20 103.6 158 39.2
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.6e-20 103.2 127 45.7
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 6.2e-20 102.4 160 40.0
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 6.2e-20 102.4 158 38.6
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 8.1e-20 102.1 160 39.4
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 8.1e-20 102.1 187 38.5
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-19 101.7 160 41.2
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-19 101.7 158 38.0
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 1.4e-19 101.3 210 35.7
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 1.8e-19 100.9 190 35.3
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.1e-19 100.1 139 42.4
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 4.0e-19 99.8 190 34.7
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.0e-19 99.8 229 34.9
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 6.8e-19 99.0 193 34.7
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 6.8e-19 99.0 161 41.6
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 6.8e-19 99.0 185 36.8
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 8.9e-19 98.6 160 38.1
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.5e-18 97.8 243 32.1
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 1.5e-18 97.8 158 36.1
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 2.6e-18 97.1 232 30.6
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 2.6e-18 97.1 157 40.1
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 2.6e-18 97.1 160 40.0
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.4e-18 96.7 157 38.9
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 4.4e-18 96.3 160 40.0
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 5.8e-18 95.9 227 31.3
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 7.6e-18 95.5 156 40.4
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 9.9e-18 95.1 152 34.9
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 9.9e-18 95.1 156 39.7
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 9.9e-18 95.1 156 39.7
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-17 94.7 192 37.5
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 1.7e-17 94.4 212 31.1
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.9e-17 93.6 152 35.5
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 2.9e-17 93.6 204 33.8
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 2.9e-17 93.6 204 33.8
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 6.4e-17 92.4 201 34.8
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 6.4e-17 92.4 201 34.8
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 6.4e-17 92.4 230 33.9
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.4e-17 92.0 157 38.2
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.4e-16 91.3 198 34.3
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-16 91.3 193 34.7
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 1.4e-16 91.3 168 37.5
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-16 90.9 227 30.8
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.4e-16 90.5 224 33.9
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 3.2e-16 90.1 163 40.5
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.2e-16 90.1 161 36.6
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 4.1e-16 89.7 151 35.8
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 4.1e-16 89.7 151 35.8
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 5.4e-16 89.4 73 60.3
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 7.1e-16 89.0 168 36.9
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 7.1e-16 89.0 168 36.9
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 7.1e-16 89.0 168 36.9
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 7.1e-16 89.0 251 32.3
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 9.2e-16 88.6 158 36.7
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 9.2e-16 88.6 168 36.9
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.2e-15 88.2 225 32.9
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 1.2e-15 88.2 152 36.2
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 1.6e-15 87.8 163 40.5
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 1.6e-15 87.8 152 34.9
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.1e-15 87.4 191 32.5
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.1e-15 87.4 187 35.8
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.6e-15 86.3 176 34.7
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 7.8e-15 85.5 161 36.0
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 1.3e-14 84.7 168 36.3
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 1.3e-14 84.7 196 32.1
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 1.3e-14 84.7 196 32.1
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 1.3e-14 84.7 209 34.0
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.3e-14 84.7 235 33.2
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.3e-14 84.0 204 32.8
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 3.0e-14 83.6 84 48.8
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 3.9e-14 83.2 158 37.3
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 3.9e-14 83.2 158 37.3
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 3.9e-14 83.2 158 37.3
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 3.9e-14 83.2 220 31.8
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 5.1e-14 82.8 156 35.9
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 5.1e-14 82.8 164 34.8
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 8.6e-14 82.0 220 31.4
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 8.6e-14 82.0 161 34.8
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 1.1e-13 81.6 197 35.0
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.5e-13 81.3 84 48.8
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.9e-13 80.9 157 36.3
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.9e-13 80.9 201 31.3
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 2.5e-13 80.5 154 33.8
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.3e-13 80.1 160 33.8
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.3e-13 79.7 152 33.6
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 5.6e-13 79.3 206 33.0
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 7.3e-13 79.0 206 33.0
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.2e-12 78.2 162 33.3
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.2e-12 78.2 134 35.1
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.1e-12 77.4 152 32.9
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 3.6e-12 76.6 178 33.1
Sp6g03580 Schrenkiella parvula HOM05D012310 ORTHO05D012594 4.7e-12 76.3 166 33.1
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.2e-12 75.9 224 29.9
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.2e-12 75.9 193 31.1
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 1.1e-11 75.1 220 30.5
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.8e-11 74.3 159 30.2
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.8e-11 74.3 162 34.6
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.4e-11 73.9 202 33.7
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 2.4e-11 73.9 161 36.0
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 3.1e-11 73.6 191 35.6
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 1.5e-10 71.2 158 34.2
THA.LOC104801560 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.4e-10 70.1 146 34.2
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.4e-10 69.7 139 30.9
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.4e-10 69.7 156 32.7
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.8e-10 69.3 224 27.2
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 7.6e-10 68.9 161 31.7
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 7.6e-10 68.9 222 28.8
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 1.3e-09 68.2 168 31.5
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.2e-09 67.4 157 29.3
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 2.2e-09 67.4 176 30.1
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 2.2e-09 67.4 176 30.1
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-08 65.1 161 26.7
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.1e-08 65.1 207 30.0
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-08 64.3 145 33.8
CARHR284350 Cardamine hirsuta HOM05D004201 ORTHO05D031360 1.9e-08 64.3 61 55.7
THA.LOC104801558 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.2e-08 63.5 137 33.6
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.6e-07 61.2 196 28.1
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 4.6e-07 59.7 193 29.5
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 6.0e-07 59.3 95 40.0
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 1.7e-06 57.8 111 34.2
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.0e-06 57.0 122 37.7
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.7e-06 55.5 72 36.1
AT3G05450 Arabidopsis thaliana HOM05D004201 ORTHO05D011677 8.7e-06 55.5 222 27.9


User provided reference genes

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