Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 9.7e-124 446.8 224 100.0
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.1e-66 254.6 204 61.8
AT3G05685 Arabidopsis thaliana HOM05D004201 ORTHO05D031360 3.3e-39 166.0 104 75.0
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.8e-38 162.9 233 46.8
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 1.4e-37 160.6 165 53.9
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.8e-37 160.2 165 54.5
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 2.4e-37 159.8 164 54.9
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 1.4e-34 150.6 225 45.3
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 4.2e-34 149.1 172 50.6
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 3.5e-33 146.0 220 43.6
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 6.0e-33 145.2 212 46.2
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-32 142.9 230 46.1
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 6.7e-32 141.7 218 44.0
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.7e-30 136.0 160 45.6
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.5e-28 129.0 158 47.5
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.6e-28 128.3 154 46.8
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.8e-27 125.9 195 39.0
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 8.4e-27 124.8 228 37.3
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 1.4e-26 124.0 159 44.7
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 3.2e-26 122.9 158 47.5
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.6e-25 120.6 134 50.0
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 6.0e-25 118.6 158 44.9
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 1.0e-24 117.9 162 42.6
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.8e-24 117.1 120 52.5
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.0e-24 116.3 158 45.6
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 3.0e-24 116.3 162 43.2
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 3.9e-24 115.9 158 43.7
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 5.1e-24 115.5 157 44.6
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 6.7e-24 115.2 158 44.3
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 8.7e-24 114.8 160 42.5
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 8.7e-24 114.8 166 46.4
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 4.3e-23 112.5 220 36.4
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 5.7e-23 112.1 164 46.3
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.3e-22 110.9 156 41.7
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-22 110.5 158 43.7
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 1.6e-22 110.5 214 37.4
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-22 110.2 185 40.0
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 2.1e-22 110.2 228 35.1
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-22 110.2 160 42.5
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 2.8e-22 109.8 164 43.3
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 3.7e-22 109.4 160 42.5
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 4.8e-22 109.0 158 40.5
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 4.8e-22 109.0 160 42.5
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 4.8e-22 109.0 221 38.9
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-22 108.6 159 40.3
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 8.2e-22 108.2 197 38.1
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.1e-21 107.8 157 41.4
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.4e-21 107.5 215 37.2
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 3.1e-21 106.3 161 40.4
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 4.1e-21 105.9 161 40.4
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 4.1e-21 105.9 161 41.6
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 4.1e-21 105.9 160 42.5
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 5.3e-21 105.5 158 41.1
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 6.9e-21 105.1 74 68.9
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.5e-20 104.0 157 38.9
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-20 103.6 159 39.0
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 2.0e-20 103.6 158 39.2
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 2.6e-20 103.2 158 39.9
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 2.6e-20 103.2 216 36.1
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 4.5e-20 102.4 216 34.7
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 5.9e-20 102.1 158 38.6
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 7.6e-20 101.7 158 38.6
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-19 101.3 156 41.0
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 1.7e-19 100.5 153 41.2
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 1.7e-19 100.5 158 38.0
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 1.7e-19 100.5 153 41.2
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 1.7e-19 100.5 159 39.0
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.2e-19 100.1 154 41.6
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.2e-19 100.1 154 41.6
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 2.2e-19 100.1 158 38.0
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 2.2e-19 100.1 161 39.8
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 2.2e-19 100.1 161 39.8
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.9e-19 99.8 152 37.5
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.9e-19 99.8 140 42.9
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 2.9e-19 99.8 156 40.4
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 6.5e-19 98.6 153 37.3
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 6.5e-19 98.6 154 40.9
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 8.5e-19 98.2 159 37.7
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 1.1e-18 97.8 208 35.1
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.1e-18 97.8 228 34.2
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 1.4e-18 97.4 236 33.1
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.9e-18 97.1 206 33.5
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 1.9e-18 97.1 153 39.2
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-18 97.1 205 35.6
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 1.9e-18 97.1 153 39.2
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 1.9e-18 97.1 205 35.6
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 2.5e-18 96.7 164 39.0
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 2.5e-18 96.7 221 33.5
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 2.5e-18 96.7 164 39.0
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 2.5e-18 96.7 164 39.0
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 3.2e-18 96.3 162 38.9
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.2e-18 95.9 157 39.5
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 4.2e-18 95.9 187 35.8
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 4.2e-18 95.9 161 38.5
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 4.2e-18 95.9 158 36.1
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 4.2e-18 95.9 161 38.5
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 4.2e-18 95.9 161 38.5
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 4.2e-18 95.9 161 38.5
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.5e-18 95.5 156 38.5
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.2e-18 95.1 221 31.7
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.2e-17 94.4 220 32.7
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.2e-17 94.4 152 36.8
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.2e-17 94.4 163 39.3
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.6e-17 94.0 160 40.6
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 1.6e-17 94.0 153 39.9
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.1e-17 93.6 163 39.3
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.7e-17 93.2 152 36.8
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 2.7e-17 93.2 160 40.0
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 2.7e-17 93.2 155 40.6
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 2.7e-17 93.2 203 36.0
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.6e-17 92.8 202 34.2
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-17 92.8 162 37.7
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-17 92.8 206 33.0
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 4.6e-17 92.4 153 40.5
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.6e-17 92.4 157 35.7
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 7.9e-17 91.7 160 38.8
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.8e-16 90.5 216 34.3
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 1.8e-16 90.5 160 36.9
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 1.8e-16 90.5 160 37.5
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-16 90.1 201 33.3
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 2.3e-16 90.1 247 35.2
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 2.3e-16 90.1 211 33.2
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 3.0e-16 89.7 243 34.6
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 8.7e-16 88.2 157 36.9
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 8.7e-16 88.2 193 32.6
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.7e-16 88.2 219 34.2
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 8.7e-16 88.2 200 33.0
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.1e-15 87.8 214 31.8
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-15 87.4 157 36.9
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 1.9e-15 87.0 160 39.4
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.9e-15 87.0 163 37.4
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 2.5e-15 86.7 224 33.0
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 2.5e-15 86.7 137 39.4
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.5e-15 86.7 84 52.4
CARHR284350 Cardamine hirsuta HOM05D004201 ORTHO05D031360 5.7e-15 85.5 62 62.9
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.7e-15 85.5 207 31.4
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 9.7e-15 84.7 205 34.1
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 9.7e-15 84.7 84 52.4
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-14 84.0 199 33.7
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 2.2e-14 83.6 163 38.7
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 4.8e-14 82.4 165 39.4
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.3e-14 82.0 161 35.4
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.2e-14 81.6 162 34.6
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.4e-13 80.9 157 34.4
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.1e-13 79.7 162 33.3
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.1e-13 79.7 216 29.2
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 3.1e-13 79.7 140 39.3
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 4.1e-13 79.3 170 32.9
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 5.3e-13 79.0 153 35.3
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 6.9e-13 78.6 170 35.3
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.0e-13 78.2 219 31.5
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-12 77.4 158 32.9
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.4e-12 76.3 157 31.8
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 3.4e-12 76.3 227 30.4
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 7.7e-12 75.1 159 34.0
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 2.2e-11 73.6 182 33.5
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.8e-11 72.8 197 28.9
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 5.0e-11 72.4 98 43.9
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.5e-11 72.0 162 29.6
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.5e-11 72.0 154 35.7
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-10 70.5 168 32.1
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 1.9e-10 70.5 168 32.1
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.2e-09 67.8 159 28.3
AT3G05450 Arabidopsis thaliana HOM05D004201 ORTHO05D011677 4.6e-09 65.9 148 35.1
THA.LOC104801560 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.6e-09 65.9 148 34.5
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.7e-08 62.0 72 40.3
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 8.8e-08 61.6 162 33.3
THA.LOC104801558 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 8.8e-08 61.6 137 34.3
CSS0009631 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 2.6e-07 60.1 151 29.8
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 5.7e-07 58.9 106 34.0
TWI36G0661 Tripterygium wilfordii HOM05D018753 ORTHO05D007789 2.2e-06 57.0 147 27.2
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-06 55.5 155 32.3


User provided reference genes

Program Settings