Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.6e-126 456.1 224 100.0
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.7e-75 286.6 185 78.4
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 6.0e-73 278.1 216 70.4
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-72 276.9 216 69.0
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.2e-62 243.8 227 56.4
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 2.8e-62 242.7 220 61.4
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.1e-61 240.7 191 66.5
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.8e-61 240.0 223 61.0
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 2.3e-61 239.6 230 57.0
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 8.9e-61 237.7 230 56.1
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 1.5e-60 236.9 230 55.7
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 2.0e-60 236.5 222 60.8
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 2.6e-60 236.1 227 55.5
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 2.6e-60 236.1 217 60.8
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 2.6e-60 236.1 188 68.6
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 5.8e-60 235.0 225 55.6
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 4.9e-59 231.9 228 54.8
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 4.9e-59 231.9 228 54.8
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 4.9e-59 231.9 236 54.2
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-58 230.3 216 61.1
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 4.1e-58 228.8 237 52.7
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.1e-58 228.8 148 73.0
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 9.2e-58 227.6 228 53.9
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.6e-57 226.9 237 54.0
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 3.5e-57 225.7 219 59.4
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 7.8e-57 224.6 215 59.1
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 1.3e-56 223.8 230 52.2
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 1.3e-56 223.8 233 52.8
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 3.9e-56 222.2 218 58.7
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 5.1e-56 221.9 219 53.0
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 1.1e-55 220.7 230 51.3
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.3e-55 219.2 228 52.6
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 3.1e-53 212.6 219 57.1
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 3.4e-52 209.1 232 51.7
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 4.4e-52 208.8 153 71.9
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 2.7e-49 199.5 188 58.5
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 3.0e-48 196.1 153 69.3
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 6.6e-48 194.9 221 47.1
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 1.6e-46 190.3 231 44.6
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 4.8e-46 188.7 224 45.5
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 8.1e-46 188.0 227 42.3
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.4e-45 187.2 226 42.5
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.8e-45 186.8 224 41.5
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 3.1e-45 186.0 229 42.8
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 5.3e-45 185.3 229 43.7
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 6.9e-45 184.9 222 44.6
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 9.0e-45 184.5 228 44.3
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 2.0e-44 183.3 222 44.1
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 3.4e-44 182.6 225 42.7
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 3.4e-44 182.6 229 43.2
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.4e-44 182.6 229 44.5
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 3.4e-44 182.6 222 43.7
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 3.4e-44 182.6 226 42.5
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 4.4e-44 182.2 229 43.2
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 5.8e-44 181.8 229 41.9
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 7.6e-44 181.4 226 42.5
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 9.9e-44 181.0 229 42.4
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 9.9e-44 181.0 229 44.5
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 9.9e-44 181.0 229 42.4
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 1.3e-43 180.6 228 42.1
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.3e-43 180.6 220 43.6
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.3e-43 180.6 228 42.1
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 2.2e-43 179.9 225 42.2
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 2.9e-43 179.5 219 43.4
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 3.8e-43 179.1 228 42.1
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 3.8e-43 179.1 221 41.2
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 4.9e-43 178.7 221 43.0
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 4.9e-43 178.7 229 41.5
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 4.9e-43 178.7 230 41.3
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 6.4e-43 178.3 225 44.9
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 1.1e-42 177.6 226 43.4
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.1e-42 177.6 229 40.2
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 1.4e-42 177.2 226 41.2
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 1.9e-42 176.8 225 40.0
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 2.4e-42 176.4 222 41.4
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.4e-42 176.4 229 40.6
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.4e-42 176.4 254 37.4
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.4e-42 176.4 232 40.9
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 2.4e-42 176.4 232 41.8
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 4.2e-42 175.6 224 40.2
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 4.2e-42 175.6 224 40.2
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 4.2e-42 175.6 227 43.2
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 5.4e-42 175.3 224 40.2
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 7.1e-42 174.9 234 40.6
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 7.1e-42 174.9 240 38.8
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 9.3e-42 174.5 229 41.0
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 2.1e-41 173.3 228 39.9
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 2.1e-41 173.3 228 42.1
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 2.7e-41 172.9 219 50.7
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 2.7e-41 172.9 188 45.2
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 6.0e-41 171.8 228 40.8
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 6.0e-41 171.8 228 41.7
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 6.0e-41 171.8 186 45.2
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 7.9e-41 171.4 228 40.8
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 7.9e-41 171.4 230 41.7
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 1.0e-40 171.0 228 41.7
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.0e-40 171.0 208 44.2
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.3e-40 170.6 229 42.8
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.7e-40 170.2 222 42.3
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 2.3e-40 169.9 235 39.6
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 3.0e-40 169.5 222 42.3
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 3.9e-40 169.1 227 40.5
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 5.1e-40 168.7 228 40.4
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 6.6e-40 168.3 162 59.3
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 8.7e-40 167.9 224 40.6
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 8.7e-40 167.9 222 41.4
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 8.7e-40 167.9 222 41.4
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.1e-39 167.5 215 41.4
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 1.1e-39 167.5 229 41.0
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 1.5e-39 167.2 190 43.7
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 2.5e-39 166.4 190 43.2
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 2.5e-39 166.4 228 41.2
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 4.3e-39 165.6 190 44.7
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 5.6e-39 165.2 228 39.9
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 7.4e-39 164.9 229 39.7
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.3e-38 164.1 183 43.2
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 1.3e-38 164.1 231 39.8
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.6e-38 163.7 110 74.5
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 1.6e-38 163.7 228 39.9
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 3.6e-38 162.5 192 42.7
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 6.2e-38 161.8 223 39.5
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 8.1e-38 161.4 228 39.5
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 2.4e-37 159.8 231 35.9
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 6.9e-37 158.3 224 39.7
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 9.0e-37 157.9 233 38.6
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 4.5e-36 155.6 222 38.7
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 5.8e-36 155.2 227 37.9
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 5.8e-36 155.2 222 40.1
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.2e-35 153.3 190 43.2
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 6.4e-35 151.8 229 40.2
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 4.2e-34 149.1 249 35.7
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 1.6e-30 137.1 226 36.3
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 3.7e-30 136.0 216 34.3
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 2.4e-29 133.3 218 36.7
A01p31840 Brassica napus HOM05D004840 ORTHO05D005751 1.5e-28 130.6 113 62.8
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 7.6e-28 128.3 203 34.0
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.1e-25 120.2 214 33.6
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 1.9e-23 113.6 95 65.3
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 3.3e-23 112.8 122 42.6
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 2.8e-22 109.8 128 38.3
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 6.3e-14 82.0 79 43.0
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 8.2e-14 81.6 224 29.0
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 8.5e-11 71.6 130 33.1
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 5.5e-10 68.9 95 41.1
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 5.1e-08 62.4 138 28.3


User provided reference genes

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