Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.1e-253 879.4 440 100.0
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 1.2e-242 842.8 441 96.1
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 1.2e-231 806.2 441 92.7
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 2.7e-226 788.5 441 89.8
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 4.0e-222 774.6 441 87.5
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 9.2e-219 763.5 442 86.7
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 1.2e-218 763.1 457 84.7
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 6.0e-218 760.8 441 86.6
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 1.1e-216 756.5 466 82.6
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 1.1e-190 670.2 497 72.2
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 5.3e-190 667.9 450 75.6
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 8.1e-175 617.5 353 87.3
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 2.6e-165 585.9 444 67.1
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 3.2e-163 578.9 452 66.6
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 5.5e-163 578.2 451 65.9
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 7.4e-160 567.8 458 65.5
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 1.3e-159 567.0 452 65.9
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 1.6e-159 566.6 447 65.8
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 1.6e-159 566.6 453 64.0
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 2.2e-159 566.2 450 65.6
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 8.2e-159 564.3 455 65.1
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 8.2e-159 564.3 456 64.0
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 2.4e-158 562.8 429 66.4
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 3.1e-158 562.4 453 64.0
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 1.0e-156 557.4 452 65.7
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 1.0e-156 557.4 453 63.8
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 1.7e-156 556.6 455 64.6
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 2.2e-156 556.2 487 60.0
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 8.5e-156 554.3 449 62.8
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 6.1e-154 548.1 451 64.1
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 1.4e-153 547.0 451 63.2
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 6.7e-153 544.7 451 64.1
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 2.0e-152 543.1 450 62.0
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 2.5e-152 542.7 459 62.7
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 6.3e-151 538.1 450 62.0
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 6.3e-151 538.1 449 64.6
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 4.1e-150 535.4 447 61.3
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 5.3e-150 535.0 433 64.0
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 6.9e-150 534.6 453 61.8
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 3.4e-149 532.3 448 62.7
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 1.0e-148 530.8 451 62.1
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 1.0e-148 530.8 467 57.4
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 1.3e-148 530.4 433 63.7
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 5.0e-148 528.5 349 73.9
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.1e-147 527.3 452 61.7
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 1.1e-147 527.3 452 60.4
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 1.9e-147 526.6 412 66.0
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 4.2e-147 525.4 475 58.7
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 2.7e-146 522.7 450 60.2
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.6e-146 522.3 453 60.7
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 4.7e-146 521.9 449 61.0
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 3.9e-145 518.8 446 59.6
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 8.8e-145 517.7 449 61.7
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 1.1e-144 517.3 452 60.2
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 2.0e-144 516.5 339 73.2
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 2.6e-144 516.2 453 60.7
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 4.4e-144 515.4 454 60.4
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 7.4e-144 514.6 450 59.6
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 7.4e-144 514.6 452 60.4
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 2.2e-143 513.1 445 59.8
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 4.1e-142 508.8 450 60.7
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 1.5e-141 506.9 447 60.4
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.5e-141 505.8 454 59.9
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 1.0e-140 504.2 442 57.9
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 1.3e-140 503.8 456 58.3
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 5.0e-140 501.9 454 59.3
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 5.0e-140 501.9 455 60.0
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 6.5e-140 501.5 454 58.8
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 8.5e-140 501.1 442 57.7
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 8.5e-140 501.1 412 62.1
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 1.9e-139 500.0 442 57.7
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 5.5e-139 498.4 255 94.1
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 2.7e-138 496.1 454 58.8
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 4.7e-138 495.4 442 57.5
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 1.4e-137 493.8 450 57.3
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 2.3e-137 493.0 391 64.7
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 2.3e-137 493.0 337 71.2
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.9e-137 492.3 391 64.7
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 3.3e-136 489.2 442 57.0
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 4.4e-136 488.8 450 58.7
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 7.4e-136 488.0 451 58.1
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 7.4e-136 488.0 441 58.5
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 2.2e-135 486.5 408 62.3
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.6e-133 480.3 395 63.3
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 4.5e-133 478.8 472 55.9
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 2.9e-132 476.1 399 61.9
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 4.2e-131 472.2 339 67.8
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 7.2e-131 471.5 464 56.5
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 3.0e-129 466.1 336 68.5
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 1.1e-123 447.6 458 52.6
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 1.5e-123 447.2 457 53.6
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 1.9e-123 446.8 469 53.1
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 7.2e-123 444.9 457 53.0
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 1.4e-121 440.7 372 63.2
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 1.0e-116 424.5 317 67.5
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 3.3e-115 419.5 245 84.5
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 1.2e-114 417.5 393 56.5
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 6.1e-114 415.2 377 57.6
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 2.6e-112 409.8 255 75.3
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 1.7e-111 407.1 391 56.5
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 4.9e-111 405.6 474 48.1
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.9e-108 396.4 253 72.7
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 1.7e-100 370.5 370 55.9
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 8.6e-100 368.2 432 49.3
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.2e-98 362.1 275 64.0
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 2.2e-95 353.6 386 46.9
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.4e-94 350.9 289 61.9
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 7.1e-94 348.6 352 50.9
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 6.0e-93 345.5 357 49.6
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 2.3e-92 343.6 347 51.3
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 3.4e-88 329.7 355 51.5
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 2.4e-86 323.6 294 59.2
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 6.6e-84 315.5 187 88.2
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 8.6e-84 315.1 332 51.8
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 3.4e-80 303.1 317 50.5
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.2e-69 268.1 452 40.9
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.1e-66 257.3 293 51.2
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 9.9e-64 248.4 435 39.3
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 1.6e-53 214.5 170 62.9
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 1.0e-52 211.8 315 44.4
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 2.8e-50 203.8 234 50.4
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 4.6e-37 159.8 193 52.3
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 1.2e-32 145.2 93 71.0
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 4.2e-30 136.7 122 57.4
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 2.3e-28 131.0 392 27.6
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 2.0e-27 127.9 134 53.0
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 5.0e-23 113.2 201 35.3
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 5.0e-23 113.2 140 55.7
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.5e-22 110.9 60 76.7
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.5e-22 110.9 125 46.4
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 5.0e-15 86.7 73 60.3
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.2e-13 82.0 209 35.9
C03p41530 Brassica napus HOM05D033945 ORTHO05D033616 9.4e-06 55.8 45 60.0
BolC3t16434H Brassica oleracea HOM05D033945 ORTHO05D033616 9.4e-06 55.8 45 60.0


User provided reference genes

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