Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 9.4e-130 466.8 232 100.0
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.1e-77 292.0 191 78.5
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.1e-60 236.5 236 58.1
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.0e-60 235.0 236 57.6
AT3G05450 Arabidopsis thaliana HOM05D004201 ORTHO05D011677 4.4e-55 218.8 166 68.7
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.3e-50 202.2 219 53.0
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 4.3e-50 202.2 182 58.2
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 5.6e-50 201.8 212 55.2
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 9.6e-50 201.1 206 53.9
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 8.1e-49 198.0 229 49.3
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 3.1e-48 196.1 214 52.8
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 2.0e-47 193.4 216 50.5
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.4e-45 185.3 165 53.9
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 3.0e-43 179.5 157 58.6
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.3e-38 164.1 226 47.3
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 9.3e-37 157.9 101 74.3
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.1e-36 156.8 192 49.0
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 9.0e-32 141.4 160 45.6
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.0e-31 140.2 86 75.6
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.9e-29 133.7 139 47.5
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 6.0e-28 128.6 188 40.4
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 5.1e-27 125.6 173 43.4
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 9.7e-26 121.3 217 38.7
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 1.8e-24 117.1 195 39.0
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.7e-22 110.5 198 37.4
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 5.0e-22 109.0 171 40.9
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.4e-21 107.5 167 38.3
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 1.9e-21 107.1 207 37.7
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 5.5e-21 105.5 165 43.0
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 2.1e-20 103.6 189 39.7
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.7e-20 103.2 189 35.4
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 2.7e-20 103.2 177 39.5
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 4.6e-20 102.4 175 40.6
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 4.6e-20 102.4 168 42.3
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 4.6e-20 102.4 201 37.3
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 6.1e-20 102.1 189 39.2
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 6.1e-20 102.1 162 43.2
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 6.1e-20 102.1 192 41.1
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.0e-19 101.3 229 34.5
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 1.0e-19 101.3 211 35.1
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 1.4e-19 100.9 212 37.7
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 1.8e-19 100.5 168 42.3
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-19 100.1 203 35.0
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-19 100.1 167 41.3
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 2.3e-19 100.1 211 35.5
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 3.0e-19 99.8 171 36.8
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.9e-19 99.4 196 39.8
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 3.9e-19 99.4 214 36.0
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 6.7e-19 98.6 213 35.2
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 6.7e-19 98.6 197 39.1
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 6.7e-19 98.6 177 39.5
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 8.8e-19 98.2 189 40.2
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-18 97.8 175 39.4
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 1.5e-18 97.4 168 38.1
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 1.5e-18 97.4 168 38.1
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 1.5e-18 97.4 168 38.1
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 2.5e-18 96.7 211 38.4
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 2.5e-18 96.7 168 38.1
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 2.5e-18 96.7 209 36.4
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 3.3e-18 96.3 193 39.4
AL6G49270 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 7.4e-18 95.1 174 37.9
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 7.4e-18 95.1 169 36.1
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 7.4e-18 95.1 207 38.6
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 9.7e-18 94.7 157 40.1
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 9.7e-18 94.7 186 34.9
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 9.7e-18 94.7 186 34.9
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.8e-17 93.2 216 32.9
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 3.7e-17 92.8 211 38.9
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 4.8e-17 92.4 205 38.5
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 4.8e-17 92.4 205 38.5
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 4.8e-17 92.4 215 37.2
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 4.8e-17 92.4 169 35.5
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 4.8e-17 92.4 220 35.9
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-17 92.0 162 38.9
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-17 92.0 199 34.2
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 8.2e-17 91.7 193 37.8
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 8.2e-17 91.7 209 35.4
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 1.8e-16 90.5 194 36.6
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 1.8e-16 90.5 194 36.6
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 2.4e-16 90.1 199 35.2
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.1e-16 89.7 177 35.6
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.1e-16 89.7 182 37.4
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 4.1e-16 89.4 142 39.4
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 4.1e-16 89.4 182 35.2
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 5.3e-16 89.0 188 34.0
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 6.9e-16 88.6 204 36.3
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 6.9e-16 88.6 211 37.0
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-15 87.8 218 36.7
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-15 87.4 166 37.3
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-15 87.4 169 35.5
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.4e-15 86.3 186 37.1
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 3.4e-15 86.3 193 35.8
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 3.4e-15 86.3 199 32.7
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 4.5e-15 85.9 180 33.9
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 7.7e-15 85.1 174 39.7
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 7.7e-15 85.1 179 33.5
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 7.7e-15 85.1 164 34.1
Sp6g03580 Schrenkiella parvula HOM05D012310 ORTHO05D012594 1.0e-14 84.7 159 35.2
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 2.2e-14 83.6 170 38.2
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 2.9e-14 83.2 203 32.5
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 2.9e-14 83.2 180 33.3
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 3.8e-14 82.8 187 33.7
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 3.8e-14 82.8 161 37.9
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 5.0e-14 82.4 155 38.1
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 5.0e-14 82.4 201 33.8
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 6.5e-14 82.0 179 33.5
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 8.5e-14 81.6 206 35.0
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.5e-14 81.6 191 34.0
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.4e-13 80.9 187 32.6
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.5e-13 80.1 162 33.3
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.5e-13 80.1 194 35.1
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.5e-13 80.1 163 38.0
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 2.5e-13 80.1 163 38.0
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 3.2e-13 79.7 190 35.3
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 3.2e-13 79.7 190 35.3
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.2e-13 79.7 164 34.1
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.5e-13 79.0 196 33.7
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.2e-13 78.6 164 34.8
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 1.6e-12 77.4 171 36.3
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 1.6e-12 77.4 183 36.1
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 1.6e-12 77.4 178 34.8
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.6e-12 76.3 188 31.9
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.6e-12 76.3 164 34.1
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.7e-12 75.9 164 33.5
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 7.9e-12 75.1 202 32.7
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.0e-11 74.7 187 32.6
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.1e-11 72.4 185 29.2
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 5.1e-11 72.4 237 32.1
Carub.0003s0473 Capsella rubella HOM05D004201 ORTHO05D011677 8.8e-11 71.6 100 50.0
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 3.3e-10 69.7 190 33.2
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 3.3e-10 69.7 73 50.7
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 4.4e-10 69.3 190 33.2
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 5.7e-10 68.9 164 32.9
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 1.7e-09 67.4 165 36.4
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 1.7e-09 67.4 165 36.4
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 3.7e-09 66.2 171 35.1
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.8e-09 65.9 160 33.8
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.8e-09 65.9 131 34.4
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 8.2e-09 65.1 200 32.0
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 8.2e-09 65.1 225 28.0
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.4e-08 64.3 95 42.1
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.8e-08 63.9 153 31.4
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.8e-08 63.9 143 35.7
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-08 63.5 152 28.9
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 5.3e-08 62.4 152 28.9
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 7.0e-08 62.0 222 32.9
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.1e-08 61.6 204 31.4
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 2.6e-07 60.1 199 32.2
AL3G16020 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.0e-06 55.8 47 55.3
THA.LOC104801560 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.0e-06 55.8 171 28.1
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 8.5e-06 55.1 201 31.3


User provided reference genes

Program Settings