Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G15790 Arabidopsis lyrata HOM05D000001 ORTHO05D009286 2.2e-151 538.9 260 100.0
AT3G05345 Arabidopsis thaliana HOM05D000001 ORTHO05D009286 4.8e-98 361.7 178 95.5
Carub.0003s0462 Capsella rubella HOM05D000001 ORTHO05D009286 1.1e-94 350.5 178 92.1
Sp3g04210 Schrenkiella parvula HOM05D000001 ORTHO05D009286 8.7e-92 340.9 178 89.9
BNapus_Darmor_BZH_scaffold_114p00160 Brassica napus HOM05D000001 ORTHO05D009286 1.9e-91 339.7 178 89.3
BraSC132t45509Z Brassica rapa HOM05D000001 ORTHO05D009286 1.9e-91 339.7 178 89.3
CARHR079690 Cardamine hirsuta HOM05D000001 ORTHO05D009286 1.9e-91 339.7 178 89.9
THA.LOC104821713 Tarenaya hassleriana HOM05D000001 ORTHO05D009286 1.1e-78 297.4 179 79.3
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 6.0e-77 291.6 158 84.8
BcaC05g30155 Brassica carinata HOM05D000001 ORTHO05D009286 5.1e-76 288.5 151 89.4
Manes.09G167201 Manihot esculenta HOM05D000001 ORTHO05D009286 4.1e-73 278.9 177 73.4
Ciclev10002196m.g Citrus clementina HOM05D000001 ORTHO05D009286 5.3e-73 278.5 179 74.9
RcHm_v2.0_Chr3g0454761 Rosa chinensis HOM05D000001 ORTHO05D009286 2.0e-72 276.6 178 72.5
Gorai.007G297100 Gossypium raimondii HOM05D000001 ORTHO05D009286 4.5e-72 275.4 179 74.9
TWI12G0446 Tripterygium wilfordii HOM05D000001 ORTHO05D009286 5.9e-72 275.0 178 70.8
CiPaw.07G017900 Carya illinoinensis HOM05D000001 ORTHO05D009286 1.7e-71 273.5 178 70.8
Duzib177G1137 Durio zibethinus HOM05D000001 ORTHO05D009582 2.9e-71 272.7 179 72.6
Gohir.D11G275300 Gossypium hirsutum HOM05D000001 ORTHO05D009286 3.8e-71 272.3 179 74.3
Gohir.A11G265100 Gossypium hirsutum HOM05D000001 ORTHO05D009286 5.0e-71 271.9 179 73.7
Thecc.05G303100 Theobroma cacao HOM05D000001 ORTHO05D009286 8.5e-71 271.2 179 72.6
Hund07071 Selenicereus undatus HOM05D000001 ORTHO05D009286 2.5e-70 269.6 176 72.2
Potri.013G021000 Populus trichocarpa HOM05D000001 ORTHO05D009286 3.2e-70 269.2 179 69.8
EL10Ac6g14022 Beta vulgaris HOM05D000001 ORTHO05D009286 9.3e-70 267.7 178 70.2
CANSAT78G1766 Cannabis sativa HOM05D000001 ORTHO05D009286 1.2e-69 267.3 178 71.3
QL03p007002 Quercus lobata HOM05D000001 ORTHO05D009286 1.6e-69 266.9 176 69.9
Haze_04195 Corylus avellana HOM05D000001 ORTHO05D009582 2.7e-69 266.2 178 69.7
CANSAT78G0322 Cannabis sativa HOM05D000001 ORTHO05D009286 3.6e-69 265.8 178 70.8
Dinv40288 Davidia involucrata HOM05D000001 ORTHO05D009286 3.6e-69 265.8 179 70.4
MD12G1219200 Malus domestica HOM05D000001 ORTHO05D009286 4.6e-69 265.4 178 68.5
Prupe.6G325800 Prunus persica HOM05D000001 ORTHO05D009286 6.1e-69 265.0 178 69.7
Sc06g0003290 Simmondsia chinensis HOM05D000001 ORTHO05D009286 6.1e-69 265.0 176 70.5
GSVIVG01000053001 Vitis vinifera HOM05D000001 ORTHO05D009286 7.9e-69 264.6 179 70.9
Actinidia23635 Actinidia chinensis HOM05D000001 ORTHO05D009286 2.3e-68 263.1 179 68.2
Eucgr.B01968 Eucalyptus grandis HOM05D000001 ORTHO05D009286 2.3e-68 263.1 177 72.3
Psat3g010960 Pisum sativum HOM05D000001 ORTHO05D009286 8.7e-68 261.2 180 69.4
TAR362G0463 Trochodendron aralioides HOM05D000001 ORTHO05D009286 1.5e-67 260.4 179 70.4
Cc02_g33430 Coffea canephora HOM05D000001 ORTHO05D009286 7.4e-67 258.1 179 68.7
Nitab4.5_0000137g0060 Nicotiana tabacum HOM05D000001 ORTHO05D009286 9.7e-67 257.7 184 67.4
PGSC0003DMG400024697 Solanum tuberosum HOM05D000001 ORTHO05D009286 9.7e-67 257.7 184 66.3
arahy.Tifrunner.gnm1.ann1.LJ09F6 Arachis hypogaea HOM05D000001 ORTHO05D009286 1.3e-66 257.3 181 67.4
CsaV3_2G005310 Cucumis sativus L. HOM05D000001 ORTHO05D009286 1.3e-66 257.3 177 68.4
FAN06G3148 Fragaria x ananassa HOM05D000001 ORTHO05D009286 1.3e-66 257.3 178 67.4
arahy.Tifrunner.gnm1.ann1.N2G7N8 Arachis hypogaea HOM05D000001 ORTHO05D009286 2.8e-66 256.1 179 68.2
ClCG02G015790 Citrullus lanatus HOM05D000001 ORTHO05D009286 3.7e-66 255.8 177 68.4
FvH4_7g03590 Fragaria vesca HOM05D000001 ORTHO05D009286 3.7e-66 255.8 178 66.9
CAN.G1034.26 Capsicum annuum HOM05D000001 ORTHO05D009286 4.8e-66 255.4 184 65.8
Atru.chr2.405 Acer truncatum HOM05D000001 ORTHO05D009286 8.2e-66 254.6 179 69.3
CSS0009057 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009286 8.2e-66 254.6 179 66.5
DCAR_024833 Daucus carota HOM05D000001 ORTHO05D009286 8.2e-66 254.6 179 68.7
Lalb_Chr18g0045641 Lupinus albus HOM05D000001 ORTHO05D009286 8.2e-66 254.6 187 65.2
Ca_09356_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009286 1.1e-65 254.2 179 66.5
Medtr7g113530 Medicago truncatula HOM05D000001 ORTHO05D009286 1.4e-65 253.8 181 66.9
Peaxi162Scf00037g00631 Petunia axillaris HOM05D000001 ORTHO05D009286 1.4e-65 253.8 184 66.3
Sed0027835 Sechium edule HOM05D000001 ORTHO05D009286 1.4e-65 253.8 177 67.2
MELO3C004256.2 Cucumis melo HOM05D000001 ORTHO05D009286 3.1e-65 252.7 177 67.2
MSTRG.16965 Avicennia marina HOM05D000001 ORTHO05D009286 6.9e-65 251.5 179 68.2
Lj1g0025628 Lotus japonicus HOM05D000001 ORTHO05D009286 6.9e-65 251.5 181 67.4
RhsimUnG0226000 Rhododendron simsii HOM05D000001 ORTHO05D009286 1.5e-64 250.4 179 65.9
AUR62014152 Chenopodium quinoa HOM05D000001 ORTHO05D009286 2.0e-64 250.0 180 67.2
Glyma.03G237900 Glycine max HOM05D000001 ORTHO05D009286 2.6e-64 249.6 182 65.4
Oeu017485.1 Olea europaea HOM05D000001 ORTHO05D009286 4.5e-64 248.8 163 71.2
HanXRQChr03g0071681 Helianthus annuus HOM05D000001 ORTHO05D009286 1.3e-63 247.3 177 67.2
ECA240G0839 Erigeron canadensis HOM05D000001 ORTHO05D009286 1.7e-63 246.9 177 67.8
Solyc01g099260.3 Solanum lycopersicum HOM05D000001 ORTHO05D009286 1.7e-63 246.9 184 64.7
Sopen01g042810 Solanum pennellii HOM05D000001 ORTHO05D009286 2.2e-63 246.5 184 64.1
Migut.B01034 Erythranthe guttata HOM05D000001 ORTHO05D009286 3.8e-63 245.7 169 68.0
Nitab4.5_0003156g0050 Nicotiana tabacum HOM05D000001 ORTHO05D009286 6.5e-63 245.0 184 65.2
Nn1g02236 Nelumbo nucifera HOM05D000001 ORTHO05D009286 1.1e-62 244.2 179 66.5
Phvul.006G091900 Phaseolus vulgaris HOM05D000001 ORTHO05D009286 2.1e-61 240.0 181 62.4
VMungo0540G1561 Vigna mungo HOM05D000001 ORTHO05D009286 2.1e-61 240.0 181 62.4
Sabra13G0023400 Salix brachista HOM05D000001 ORTHO05D009286 4.6e-61 238.8 153 71.9
SalBow8G4411 Salvia bowleyana HOM05D000001 ORTHO05D009286 3.0e-60 236.1 220 56.8
Aqoxy2G03342 Aquilegia oxysepala HOM05D000001 ORTHO05D009286 1.5e-59 233.8 165 64.2
MBI17_g31750_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009286 1.5e-59 233.8 179 64.2
unitig_747.g21349 Utricularia gibba HOM05D000001 ORTHO05D009286 4.4e-59 232.3 168 62.5
Eucgr.B01873 Eucalyptus grandis HOM05D000001 ORTHO05D009286 8.2e-58 228.0 150 72.7
vmacro05020 Vaccinium macrocarpon HOM05D000001 ORTHO05D009286 9.1e-57 224.6 185 60.0
PGR083G0578 Punica granatum HOM05D000001 ORTHO05D009286 6.5e-55 218.4 176 63.1
COL.COLO4_13469 Corchorus olitorius HOM05D000001 ORTHO05D009286 1.2e-53 214.2 169 61.5
PSO170G4485 Papaver somniferum HOM05D000001 ORTHO05D009286 7.9e-53 211.5 171 60.2
PSO302G0274 Papaver somniferum HOM05D000001 ORTHO05D009286 1.5e-51 207.2 174 58.6
CDE05G2030 Ceratophyllum demersum HOM05D000001 ORTHO05D009286 1.7e-50 203.8 180 52.8
FAN03G0753 Fragaria x ananassa HOM05D000001 ORTHO05D009286 2.8e-50 203.0 232 48.7
Cfa006590 Carpinus fangiana HOM05D000001 ORTHO05D009582 3.7e-50 202.6 129 71.3
Zm00001eb287490 Zea mays HOM05D000001 ORTHO05D009286 5.3e-49 198.7 179 55.3
SGA_v2.0_scaffold172G38993 Striga asiatica HOM05D000001 ORTHO05D009286 3.5e-48 196.1 191 56.0
AUR62038496 Chenopodium quinoa HOM05D000001 ORTHO05D009286 5.9e-48 195.3 131 69.5
ATR0030G028 Amborella trichopoda HOM05D000001 ORTHO05D009286 1.7e-47 193.7 197 51.3
HPP92_013683 Vanilla planifolia HOM05D000001 ORTHO05D009286 4.7e-45 185.7 166 54.8
AagrBONN_evm.TU.Sc2ySwM_344.2674 Anthoceros agrestis HOM05D000001 ORTHO05D009286 3.5e-40 169.5 178 46.6
Mapoly0074s0078 Marchantia polymorpha HOM05D000001 ORTHO05D009286 5.0e-39 165.6 179 45.8
Pp3c27_1510 Physcomitrium patens HOM05D000001 ORTHO05D009286 6.5e-39 165.2 189 47.6
Lsat_1_v5_gn_9_123500 Lactuca sativa HOM05D000001 ORTHO05D009286 2.2e-34 150.2 162 51.2
SMO367G0812 Selaginella moellendorffii HOM05D000001 ORTHO05D009286 6.3e-34 148.7 181 44.8
TPR.G18990 Trifolium pratense HOM05D000001 ORTHO05D009286 1.2e-32 144.4 104 69.2
TPR.G33241 Trifolium pratense HOM05D000001 ORTHO05D009286 9.5e-30 134.8 96 67.7
Eucgr.B01971 Eucalyptus grandis HOM05D000001 ORTHO05D009286 1.4e-28 131.0 101 66.3
Lj9C80T2 Lonicera japonica HOM05D000001 ORTHO05D009286 2.0e-27 127.1 112 58.9
A05p32000 Brassica napus HOM05D000001 ORTHO05D009286 2.2e-26 123.6 62 88.7
BraA05t22031Z Brassica rapa HOM05D000001 ORTHO05D009286 2.2e-26 123.6 62 88.7
CBR_g31147 Chara braunii HOM05D000001 ORTHO05D009286 1.6e-24 117.5 180 36.7
Cpa.g.sc48.55 Carica papaya HOM05D000001 ORTHO05D009286 3.2e-17 93.2 52 80.8
AL3G15840 Arabidopsis lyrata HOM05D000001 ORTHO05D009582 2.3e-15 87.0 92 58.7
CARHR079700 Cardamine hirsuta HOM05D000001 ORTHO05D009582 8.6e-15 85.1 92 56.5
MCO07G492 Micromonas commoda HOM05D000001 ORTHO05D009286 9.5e-14 81.6 233 29.2
AT3G05340 Arabidopsis thaliana HOM05D000001 ORTHO05D009582 2.1e-13 80.5 48 85.4
Carub.0003s0463 Capsella rubella HOM05D000001 ORTHO05D009582 4.7e-13 79.3 92 52.2
Lj9A80T24 Lonicera japonica HOM05D000001 ORTHO05D009286 4.7e-13 79.3 45 75.6
Sp3g04220 Schrenkiella parvula HOM05D000001 ORTHO05D009582 6.2e-13 79.0 48 85.4
Thhalv10020234m.g Eutrema salsugineum HOM05D000001 ORTHO05D009582 1.1e-12 78.2 92 54.3
QL03p006686 Quercus lobata HOM05D000001 ORTHO05D009286 1.5e-11 74.3 55 60.0
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 7.5e-11 72.0 98 40.8
Aa31LG5G15710 Aethionema arabicum HOM05D000001 ORTHO05D009582 1.7e-10 70.9 81 54.3
BraA05t23025Z Brassica rapa HOM05D000001 ORTHO05D009582 1.7e-10 70.9 92 48.9
C05p61860 Brassica napus HOM05D000001 ORTHO05D009582 4.9e-10 69.3 47 74.5
BcaC05g30135 Brassica carinata HOM05D000001 ORTHO05D009582 6.4e-10 68.9 92 46.7
A05p42280 Brassica napus HOM05D000001 ORTHO05D009582 1.4e-09 67.8 47 72.3
BolC5t34846H Brassica oleracea HOM05D000001 ORTHO05D009582 1.4e-09 67.8 47 72.3
SalBow1G8141 Salvia bowleyana HOM05D003651 ORTHO05D010159 7.8e-08 62.0 143 33.6
BcaC05g30153 Brassica carinata HOM05D000001 ORTHO05D009582 1.7e-07 60.8 87 44.8
Pp3c20_22300 Physcomitrium patens HOM05D005546 ORTHO05D006458 1.7e-07 60.8 133 31.6
Cre01.g009900 Chlamydomonas reinhardtii HOM05D005546 ORTHO05D006458 2.3e-07 60.5 135 29.6
SMO217G0014 Selaginella moellendorffii HOM05D005546 ORTHO05D006458 2.3e-07 60.5 140 30.0
Ca_01720_v3 Cicer arietinum L. HOM05D005546 ORTHO05D006458 3.9e-07 59.7 196 27.0
Actinidia11165 Actinidia chinensis HOM05D005546 ORTHO05D006458 5.0e-07 59.3 133 31.6
Lalb_Chr18g0051531 Lupinus albus HOM05D003651 ORTHO05D009121 5.0e-07 59.3 204 27.0
SMO364G0270 Selaginella moellendorffii HOM05D003651 ORTHO05D010159 5.0e-07 59.3 156 30.1
Hund00861 Selenicereus undatus HOM05D005546 ORTHO05D006458 6.6e-07 58.9 134 29.9
TWI23G0943 Tripterygium wilfordii HOM05D005546 ORTHO05D006458 8.6e-07 58.5 133 32.3
Migut.H00089 Erythranthe guttata HOM05D003651 ORTHO05D010159 1.1e-06 58.2 140 27.9
Lsat_1_v5_gn_5_155340 Lactuca sativa HOM05D001365 ORTHO05D009286 1.1e-06 58.2 48 58.3
unitig_62.g23133 Utricularia gibba HOM05D005546 ORTHO05D006458 1.5e-06 57.8 134 30.6
MSTRG.12830 Avicennia marina HOM05D005546 ORTHO05D006458 1.9e-06 57.4 134 32.1
Glyma.19G063100 Glycine max HOM05D003651 ORTHO05D010159 1.9e-06 57.4 152 30.9
Lsat_1_v5_gn_4_65101 Lactuca sativa HOM05D005546 ORTHO05D006458 1.9e-06 57.4 134 32.1
PSO832G4261 Papaver somniferum HOM05D003651 ORTHO05D010159 1.9e-06 57.4 185 27.6
Medtr2g083920 Medicago truncatula HOM05D005546 ORTHO05D006458 2.5e-06 57.0 188 26.6
SEGI_27856 Sequoiadendron giganteum HOM05D005546 ORTHO05D006458 2.5e-06 57.0 133 28.6
SGA_v2.0_scaffold481G52322 Striga asiatica HOM05D003651 ORTHO05D010159 2.5e-06 57.0 179 25.7
SGA_v2.0_scaffold9G04842 Striga asiatica HOM05D005546 ORTHO05D006458 2.5e-06 57.0 134 32.1
HanXRQChr17g0558411 Helianthus annuus HOM05D005546 ORTHO05D006458 3.3e-06 56.6 134 30.6
Sed0025906 Sechium edule HOM05D005546 ORTHO05D006458 3.3e-06 56.6 133 29.3
Aa31LG5G15650 Aethionema arabicum HOM05D000001 ORTHO05D009286 4.3e-06 56.2 29 82.8
CsaV3_2G008280 Cucumis sativus L. HOM05D005546 ORTHO05D006458 4.3e-06 56.2 133 28.6
Eucgr.K01146 Eucalyptus grandis HOM05D005546 ORTHO05D006458 4.3e-06 56.2 133 28.6
Peaxi162Scf00469g00623 Petunia axillaris HOM05D005546 ORTHO05D006458 4.3e-06 56.2 134 28.4
Rhsim06G0129400 Rhododendron simsii HOM05D005546 ORTHO05D006458 4.3e-06 56.2 133 28.6
THA.LOC104821712 Tarenaya hassleriana HOM05D000001 ORTHO05D009582 4.3e-06 56.2 46 69.6
ECA234G3368 Erigeron canadensis HOM05D000557 ORTHO05D002315 5.6e-06 55.8 134 31.3
RcHm_v2.0_Chr2g0130851 Rosa chinensis HOM05D005546 ORTHO05D006458 5.6e-06 55.8 133 29.3
Sabra14G0108400 Salix brachista HOM05D005546 ORTHO05D006458 5.6e-06 55.8 133 28.6
vmacro12387 Vaccinium macrocarpon HOM05D005546 ORTHO05D006458 5.6e-06 55.8 133 28.6
Ah.01g015890 Amaranthus hybridus HOM05D001556 ORTHO05D001505 7.3e-06 55.5 140 27.9
FvH4_6g27700 Fragaria vesca HOM05D005546 ORTHO05D006458 7.3e-06 55.5 133 30.1
FAN14G3666 Fragaria x ananassa HOM05D005546 ORTHO05D006458 7.3e-06 55.5 133 30.1
Cre02.g104500 Chlamydomonas reinhardtii HOM05D005546 ORTHO05D006458 9.5e-06 55.1 144 29.2
Migut.M00246 Erythranthe guttata HOM05D005546 ORTHO05D006458 9.5e-06 55.1 134 32.8
MD17G1264200 Malus domestica HOM05D005546 ORTHO05D006458 9.5e-06 55.1 133 29.3
Nitab4.5_0000249g0130 Nicotiana tabacum HOM05D005546 ORTHO05D006458 9.5e-06 55.1 134 28.4
Nitab4.5_0007923g0010 Nicotiana tabacum HOM05D005546 ORTHO05D006458 9.5e-06 55.1 134 28.4


User provided reference genes

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