Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 7.2e-254 880.2 469 100.0
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 4.7e-221 771.2 471 89.2
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.5e-211 739.6 474 84.8
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.6e-208 729.6 439 91.1
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 2.6e-195 685.6 477 81.3
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.0e-191 673.7 473 79.1
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 6.6e-175 617.8 475 75.8
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 1.2e-171 607.1 477 74.8
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.3e-170 603.6 477 74.6
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 1.3e-165 587.0 474 71.7
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 4.9e-162 575.1 473 71.2
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 8.4e-162 574.3 474 72.2
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.9e-161 573.2 474 71.9
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 2.6e-147 526.2 455 67.0
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 5.9e-123 445.3 478 58.4
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 2.9e-114 416.4 375 66.1
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 6.8e-95 352.1 474 49.4
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 1.7e-93 347.4 466 49.4
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 2.2e-93 347.1 473 51.2
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 2.4e-92 343.6 474 50.2
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 9.5e-89 331.6 254 75.2
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.0e-88 328.6 498 45.8
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 8.0e-88 328.6 498 45.8
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.1e-87 328.2 472 47.2
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 2.3e-87 327.0 468 46.8
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.1e-87 326.6 498 45.6
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.4e-84 317.8 465 46.0
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.9e-84 317.4 484 45.5
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.4e-84 317.0 472 47.7
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 9.2e-84 315.1 469 46.1
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 9.2e-84 315.1 473 45.9
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 4.6e-83 312.8 469 46.1
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 6.6e-82 308.9 468 46.2
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 8.6e-82 308.5 498 46.6
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.3e-81 306.6 365 54.0
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 4.3e-81 306.2 382 52.4
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 4.3e-81 306.2 479 44.5
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 7.3e-81 305.4 502 45.4
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.3e-81 305.4 472 46.4
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.2e-80 304.7 478 46.7
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 2.1e-80 303.9 502 45.2
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 8.1e-80 302.0 456 46.5
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 8.1e-80 302.0 307 59.3
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.1e-79 301.6 446 45.7
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.1e-79 301.6 368 53.0
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 1.8e-79 300.8 307 59.3
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.2e-78 298.1 456 45.8
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.0e-78 297.4 305 59.7
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 2.0e-78 297.4 459 46.8
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 2.6e-78 297.0 465 45.8
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 4.4e-78 296.2 368 52.4
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 7.6e-78 295.4 481 45.3
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.7e-77 294.3 456 44.3
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 2.9e-77 293.5 475 44.0
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 4.9e-77 292.7 510 42.9
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 8.3e-77 292.0 335 54.0
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 8.3e-77 292.0 472 44.9
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 8.3e-77 292.0 400 49.0
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 5.4e-76 289.3 399 48.6
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 2.3e-74 283.9 475 42.1
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.0e-74 283.5 370 49.7
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 6.6e-74 282.3 386 50.3
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 1.5e-73 281.2 457 45.3
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.5e-73 280.4 473 44.0
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 3.3e-73 280.0 466 44.0
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.3e-73 280.0 385 50.4
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 4.3e-73 279.6 475 41.9
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 5.6e-73 279.3 378 51.1
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 5.6e-73 279.3 378 51.1
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 5.6e-73 279.3 373 52.0
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 9.6e-73 278.5 385 50.1
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 1.6e-72 277.7 387 50.9
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 3.6e-72 276.6 478 45.2
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.1e-71 275.0 480 43.1
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.1e-71 275.0 480 42.3
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 2.4e-71 273.9 459 43.1
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 5.2e-71 272.7 474 42.4
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 6.8e-71 272.3 456 43.9
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 1.5e-70 271.2 462 41.3
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 1.5e-70 271.2 377 50.9
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.5e-70 271.2 474 43.5
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 2.6e-70 270.4 461 42.5
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 5.8e-70 269.2 475 42.3
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 7.6e-70 268.9 460 43.7
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.7e-69 267.7 482 42.1
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 2.9e-69 266.9 475 42.3
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 6.4e-69 265.8 453 43.7
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.4e-68 264.6 364 49.5
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 1.2e-67 261.5 454 42.7
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 6.0e-67 259.2 474 43.5
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 5.1e-66 256.1 454 41.9
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.9e-65 254.2 375 46.4
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 5.6e-65 252.7 437 43.0
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.3e-64 251.5 481 40.5
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 3.6e-64 250.0 477 40.0
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 1.1e-63 248.4 462 40.7
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.4e-63 247.3 482 41.1
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 3.1e-63 246.9 467 41.1
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 4.0e-63 246.5 382 43.2
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 9.9e-62 241.9 458 41.7
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 2.2e-61 240.7 281 54.4
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 2.9e-61 240.4 453 41.7
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.1e-60 238.4 488 40.4
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.4e-60 238.0 375 44.8
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 2.7e-59 233.8 417 40.0
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 6.0e-59 232.6 474 39.5
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.5e-57 228.0 483 40.2
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 4.0e-55 219.9 483 37.7
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.0e-55 219.9 455 40.9
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 7.6e-54 215.7 365 44.1
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 4.2e-52 209.9 476 37.4
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.4e-47 194.9 515 35.3
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.2e-46 191.8 370 38.9
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.0e-46 191.0 444 36.7
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.0e-45 188.7 271 45.0
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.7e-45 188.0 395 41.5
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.2e-45 187.6 458 37.6
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.0e-42 178.7 437 35.7
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 5.1e-42 176.4 377 39.0
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.1e-41 175.3 385 39.5
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 1.9e-41 174.5 338 42.0
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 7.6e-38 162.5 377 36.9
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 6.5e-37 159.5 114 71.1
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 1.5e-33 148.3 342 37.1
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 7.4e-33 146.0 409 35.7
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 3.4e-30 137.1 372 36.6
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 4.2e-28 130.2 279 39.1
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 2.1e-27 127.9 348 35.1
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.7e-27 127.5 106 63.2
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 3.9e-26 123.6 368 34.5
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 4.8e-24 116.7 464 31.5
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 5.0e-21 106.7 65 80.0
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 7.2e-20 102.8 102 65.7
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.4e-18 98.6 68 69.1
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.0e-18 97.4 149 41.6
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 3.0e-18 97.4 64 75.0
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 3.9e-18 97.1 237 35.4
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 5.1e-18 96.7 66 69.7
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 6.7e-18 96.3 66 68.2
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.1e-17 95.5 59 76.3
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.1e-17 95.5 67 64.2
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.5e-14 84.0 58 67.2
BcaC05g25071 Brassica carinata HOM05D004847 ORTHO05D005856 1.3e-13 82.0 95 58.9
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.9e-13 80.9 90 54.4
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 5.5e-12 76.6 225 35.6
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 8.0e-11 72.8 150 36.0
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 6.7e-10 69.7 128 39.8
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 8.2e-08 62.8 326 29.4


User provided reference genes

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