Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 3.9e-193 677.9 342 100.0
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 2.2e-183 645.6 342 92.7
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.3e-175 619.8 342 89.2
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 2.2e-172 609.0 327 91.4
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.9e-171 605.9 342 87.7
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 6.8e-169 597.4 340 87.9
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 4.4e-168 594.7 340 87.4
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.3e-167 593.2 340 87.1
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-165 586.6 342 85.7
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.6e-165 586.3 342 85.7
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 2.3e-164 582.4 340 85.6
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 2.3e-164 582.4 340 85.6
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 8.6e-164 580.5 331 86.7
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 1.9e-163 579.3 329 87.2
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 4.7e-162 574.7 325 88.6
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 3.0e-156 555.4 326 83.1
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 2.6e-152 542.3 325 80.3
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 2.6e-152 542.3 325 80.3
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 4.4e-152 541.6 325 80.3
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 1.7e-151 539.7 325 80.0
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 4.9e-151 538.1 341 80.1
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 3.2e-150 535.4 323 80.5
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 4.1e-150 535.0 325 79.1
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 4.1e-150 535.0 325 79.1
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.0e-149 532.7 308 82.5
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 7.3e-147 524.2 326 78.2
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 7.5e-144 514.2 326 76.1
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 3.2e-142 508.8 325 75.4
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 2.7e-141 505.8 328 76.2
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.3e-140 502.7 325 75.1
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 3.0e-140 502.3 327 75.5
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.1e-139 500.4 326 75.2
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.1e-139 500.4 328 74.7
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.5e-139 499.2 329 73.6
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 3.3e-139 498.8 325 73.2
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 4.3e-139 498.4 325 73.8
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 4.7e-138 495.0 335 71.6
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 8.1e-138 494.2 330 72.4
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 3.1e-137 492.3 339 71.1
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 3.1e-137 492.3 338 70.4
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 6.8e-137 491.1 334 71.9
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.8e-137 491.1 334 71.9
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 2.0e-136 489.6 338 70.1
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.6e-136 489.2 328 73.2
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 4.4e-136 488.4 323 75.5
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 5.8e-136 488.0 333 71.5
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 9.9e-136 487.3 337 70.3
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.3e-135 486.9 330 71.8
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 2.2e-135 486.1 328 71.6
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.9e-135 485.7 334 70.7
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.4e-135 484.6 334 71.0
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.4e-135 484.6 334 71.0
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 6.4e-135 484.6 328 70.4
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.1e-134 483.8 329 72.3
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.9e-134 483.0 284 79.6
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 2.4e-134 482.6 323 71.5
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 9.2e-134 480.7 339 69.3
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.6e-133 479.9 334 70.4
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.7e-133 479.2 268 82.1
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 6.0e-133 478.0 324 72.8
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 7.8e-133 477.6 268 81.7
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.0e-132 477.2 334 69.8
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.3e-132 476.9 324 71.0
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 1.3e-132 476.9 337 70.0
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 1.3e-132 476.9 331 69.5
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 1.7e-132 476.5 328 70.7
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 6.6e-132 474.6 329 71.1
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.1e-131 473.8 331 71.6
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 1.1e-131 473.8 325 69.2
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 1.5e-131 473.4 326 69.6
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 5.6e-131 471.5 300 75.7
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 5.6e-131 471.5 324 71.3
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 7.3e-131 471.1 327 70.9
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 7.3e-131 471.1 332 70.2
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 9.6e-131 470.7 324 71.3
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 1.6e-130 469.9 326 71.2
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 1.6e-130 469.9 301 74.8
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 2.8e-130 469.2 265 81.5
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 4.7e-130 468.4 328 71.6
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 4.7e-130 468.4 265 81.5
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 6.2e-130 468.0 265 81.1
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 8.1e-130 467.6 332 69.6
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.8e-129 466.5 322 72.4
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.0e-129 465.3 299 74.9
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 4.0e-129 465.3 299 73.2
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 6.9e-129 464.5 327 69.1
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 6.9e-129 464.5 341 67.4
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 9.0e-129 464.2 311 71.7
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 1.5e-128 463.4 263 79.5
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 2.0e-128 463.0 276 79.0
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 2.6e-128 462.6 328 70.4
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 3.4e-128 462.2 276 77.5
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 5.8e-128 461.5 329 68.1
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 7.6e-128 461.1 271 79.3
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 9.9e-128 460.7 321 72.0
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 2.2e-127 459.5 323 67.8
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 3.8e-127 458.8 263 79.1
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 3.8e-127 458.8 324 68.8
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 1.1e-126 457.2 341 66.3
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.4e-126 456.8 295 74.6
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 1.4e-126 456.8 323 68.1
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.9e-126 456.4 264 80.7
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 4.2e-126 455.3 266 78.6
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 5.4e-126 454.9 295 74.6
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 5.4e-126 454.9 328 69.2
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 7.1e-126 454.5 328 69.2
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 1.6e-125 453.4 323 66.9
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 1.6e-125 453.4 323 68.7
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 7.8e-125 451.1 324 67.3
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 3.0e-124 449.1 271 78.2
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.5e-123 446.8 263 77.9
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 7.3e-123 444.5 242 84.7
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 7.3e-123 444.5 330 67.0
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 2.1e-122 443.0 295 72.9
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 9.0e-121 437.6 335 64.2
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.4e-118 430.3 233 84.1
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 6.0e-117 424.9 242 80.6
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 4.0e-113 412.1 261 73.9
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 6.9e-113 411.4 270 70.7
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 5.8e-112 408.3 216 84.3
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 5.8e-112 408.3 268 70.5
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 2.9e-111 406.0 217 83.4
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 2.9e-111 406.0 234 82.1
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 8.4e-111 404.4 221 83.7
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 7.1e-110 401.4 217 82.0
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.3e-108 397.1 219 81.3
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 8.7e-108 394.4 329 60.8
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.3e-107 392.1 328 59.5
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 2.1e-106 389.8 281 67.6
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 5.3e-105 385.2 221 88.7
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 7.6e-104 381.3 268 66.4
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 1.0e-103 380.9 208 84.1
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 3.5e-101 372.5 323 59.1
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 5.3e-97 358.6 290 62.8
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.2e-96 357.5 217 72.8
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.2e-93 347.4 333 54.7
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 4.7e-85 318.9 240 67.9
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 8.8e-84 314.7 204 77.0
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 2.4e-81 306.6 217 72.4
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 2.4e-81 306.6 233 61.4
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.7e-79 300.4 154 87.0
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.6e-77 293.9 159 84.3
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 1.8e-73 280.4 249 58.6
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 1.5e-67 260.8 161 75.8
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.1e-65 252.7 216 61.1
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 7.0e-57 225.3 127 79.5
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 6.6e-55 218.8 183 66.1
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 5.5e-54 215.7 147 68.0
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 5.8e-27 125.9 109 62.4
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 2.1e-16 90.9 84 57.1
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 1.1e-14 85.1 49 75.5
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 3.3e-14 83.6 108 44.4
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 3.1e-12 77.0 110 43.6


User provided reference genes

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