Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 7.8e-156 553.9 312 100.0
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 2.8e-145 518.8 312 93.9
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 1.3e-142 510.0 312 91.3
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 3.9e-131 471.9 313 86.3
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 1.3e-129 466.8 313 85.0
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 1.4e-125 453.4 314 83.8
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 5.5e-125 451.4 314 83.8
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 1.8e-120 436.4 312 73.1
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 2.5e-117 426.0 314 79.6
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 3.2e-117 425.6 313 78.6
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 2.1e-116 422.9 314 79.3
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 2.7e-116 422.5 314 79.3
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 3.0e-115 419.1 313 71.6
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 3.9e-115 418.7 313 71.2
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 1.1e-114 417.2 313 71.2
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 1.1e-114 417.2 313 71.2
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 1.1e-114 417.2 313 71.2
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.5e-114 416.8 313 77.6
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 2.0e-114 416.4 313 79.2
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 8.2e-113 411.0 312 76.0
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 4.5e-111 405.2 313 70.6
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 8.5e-110 401.0 312 76.3
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 2.3e-107 392.9 264 86.4
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 7.4e-106 387.9 310 72.6
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 2.8e-105 386.0 304 71.7
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 7.7e-103 377.9 311 64.0
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 5.0e-102 375.2 315 69.8
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 6.5e-102 374.8 313 62.9
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 1.5e-101 373.6 313 64.5
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 1.5e-101 373.6 313 65.2
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 2.5e-101 372.9 313 64.9
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 4.2e-101 372.1 304 65.1
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 1.6e-100 370.2 314 64.0
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 3.6e-100 369.0 304 64.8
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 1.0e-99 367.5 294 68.0
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 1.4e-99 367.1 311 60.5
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 1.4e-99 367.1 313 62.9
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 2.3e-99 366.3 311 60.1
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 3.0e-99 365.9 313 61.3
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 2.6e-98 362.8 300 62.7
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 9.7e-98 360.9 306 68.3
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 2.2e-97 359.8 309 61.2
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 2.8e-97 359.4 311 64.6
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 2.8e-97 359.4 311 65.6
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 2.8e-97 359.4 308 59.4
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 2.8e-97 359.4 313 61.3
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 3.7e-97 359.0 302 62.6
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.1e-96 357.5 302 62.6
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.4e-96 357.1 302 62.6
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 1.8e-96 356.7 335 58.5
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 3.1e-96 355.9 315 67.9
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 5.3e-96 355.1 313 59.4
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 7.0e-96 354.8 310 61.0
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 9.1e-96 354.4 302 62.9
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 9.1e-96 354.4 305 60.0
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 1.2e-95 354.0 304 62.5
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 2.0e-95 353.2 304 63.2
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 2.7e-95 352.8 302 61.9
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 2.7e-95 352.8 310 59.7
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 3.5e-95 352.4 313 58.8
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 5.9e-95 351.7 312 66.7
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 7.7e-95 351.3 313 61.7
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 7.7e-95 351.3 312 59.0
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 2.2e-94 349.7 313 61.3
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 2.2e-94 349.7 299 59.2
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 3.8e-94 349.0 289 69.6
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 6.5e-94 348.2 313 63.6
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 6.5e-94 348.2 304 59.5
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 6.5e-94 348.2 304 59.5
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 8.5e-94 347.8 312 58.0
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 1.1e-93 347.4 304 60.2
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 1.1e-93 347.4 312 57.1
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 1.5e-93 347.1 301 58.5
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 4.2e-93 345.5 307 59.3
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 7.2e-93 344.7 310 58.7
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 9.4e-93 344.4 283 63.3
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 1.2e-92 344.0 312 66.0
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 3.6e-92 342.4 259 75.3
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 4.7e-92 342.0 311 59.5
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 1.4e-91 340.5 302 58.3
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 2.3e-91 339.7 310 64.8
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 2.3e-91 339.7 302 55.6
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 3.0e-91 339.3 316 59.5
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 4.0e-91 339.0 351 59.8
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 5.2e-91 338.6 306 57.5
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.2e-90 337.4 302 60.6
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 9.8e-90 334.3 259 64.5
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 1.7e-89 333.6 315 56.5
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 2.7e-87 326.2 287 59.9
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.3e-86 323.9 343 53.6
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 2.2e-86 323.2 298 56.7
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 8.5e-86 321.2 313 56.5
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.1e-85 320.9 290 56.9
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 1.1e-85 320.9 305 55.1
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 4.2e-85 318.9 304 53.9
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 1.2e-82 310.8 214 70.1
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 2.3e-75 286.6 311 58.8
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 3.0e-75 286.2 286 60.8
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 1.2e-74 284.3 327 47.7
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 6.4e-73 278.5 304 53.0
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 1.7e-70 270.4 307 48.5
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 6.6e-70 268.5 315 48.9
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 9.5e-69 264.6 214 65.0
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 2.3e-67 260.0 303 49.8
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 6.0e-63 245.4 310 47.7
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 1.2e-60 237.7 318 44.3
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 1.6e-60 237.3 174 75.9
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 4.0e-59 232.6 172 64.0
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 1.2e-58 231.1 172 77.3
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 3.4e-58 229.6 287 47.7
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 4.9e-57 225.7 383 40.7
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 1.0e-54 218.0 254 52.0
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 1.2e-52 211.1 210 54.8
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 1.8e-51 207.2 310 45.5
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 9.9e-50 201.4 172 59.3
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 1.3e-49 201.1 196 57.7
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 1.2e-39 167.9 204 47.5
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 6.0e-39 165.6 167 56.3
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 1.5e-37 161.0 149 57.7
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 8.1e-36 155.2 253 44.3
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 2.4e-32 143.7 153 52.3
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 2.1e-31 140.6 148 53.4
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 7.9e-31 138.7 149 53.0
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.0e-30 138.3 130 60.8
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 3.0e-22 110.2 119 42.9
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 5.3e-19 99.4 58 81.0
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 1.3e-17 94.7 305 27.9
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 1.1e-16 91.7 64 70.3
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 1.1e-16 91.7 63 66.7
PRCOL_00005730 Prasinoderma coloniale HOM05D005874 ORTHO05D007206 6.0e-15 85.9 297 27.9
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 8.7e-14 82.0 200 27.5
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 5.9e-10 69.3 123 36.6


User provided reference genes

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