Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 6.7e-128 460.7 231 100.0
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 7.2e-122 440.7 232 96.1
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 5.7e-119 431.0 231 93.1
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 9.1e-117 423.7 231 92.2
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 1.4e-112 409.8 235 88.1
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 6.5e-107 391.0 234 86.3
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 1.6e-105 386.3 228 85.5
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 2.3e-104 382.5 231 83.5
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 1.1e-101 373.6 222 85.1
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 5.3e-101 371.3 222 84.7
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 7.0e-101 370.9 221 85.1
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 2.6e-100 369.0 221 84.6
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 1.3e-99 366.7 232 78.9
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 6.1e-81 304.7 212 72.6
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 4.0e-80 302.0 195 76.9
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 8.9e-80 300.8 196 74.0
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 1.2e-79 300.4 194 74.7
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.2e-79 300.4 226 66.4
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.0e-79 299.7 226 66.4
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.0e-79 299.7 226 66.4
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 2.0e-79 299.7 211 72.0
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 2.8e-78 295.8 197 75.6
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 2.8e-78 295.8 194 75.3
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 4.9e-78 295.0 232 66.8
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 8.3e-78 294.3 206 73.3
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 8.3e-78 294.3 225 67.6
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 2.4e-77 292.7 229 68.6
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 1.6e-76 290.0 193 74.1
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 1.6e-76 290.0 211 69.2
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 2.0e-76 289.7 197 73.6
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 2.7e-76 289.3 199 73.9
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 3.5e-76 288.9 210 68.1
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 1.0e-75 287.3 231 65.4
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 1.3e-75 287.0 230 66.1
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 2.9e-75 285.8 215 68.4
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 6.6e-75 284.6 192 73.4
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 8.6e-75 284.3 231 63.2
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 1.1e-74 283.9 194 73.2
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.1e-74 283.9 226 67.7
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 4.3e-74 282.0 206 70.4
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 5.6e-74 281.6 215 67.0
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 5.6e-74 281.6 232 64.2
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 7.3e-74 281.2 222 64.0
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 9.5e-74 280.8 192 71.9
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.6e-73 280.0 226 65.9
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 2.1e-73 279.6 188 70.7
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 3.6e-73 278.9 191 72.8
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 3.6e-73 278.9 193 68.9
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 4.7e-73 278.5 196 68.9
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 1.0e-72 277.3 194 70.1
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 1.0e-72 277.3 205 65.4
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 4.0e-72 275.4 225 64.9
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 5.2e-72 275.0 220 62.3
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 8.9e-72 274.2 234 62.0
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 1.2e-71 273.9 210 68.6
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 1.5e-71 273.5 186 70.4
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 1.5e-71 273.5 190 72.1
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 2.0e-71 273.1 192 68.2
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 3.4e-71 272.3 177 74.6
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 3.4e-71 272.3 204 66.7
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.4e-71 272.3 196 67.3
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 4.4e-71 271.9 195 67.7
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 4.4e-71 271.9 226 65.0
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 9.8e-71 270.8 192 67.7
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 2.2e-70 269.6 200 66.0
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 2.2e-70 269.6 178 74.2
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.9e-70 269.2 189 72.0
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 8.3e-70 267.7 189 70.4
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 1.1e-69 267.3 190 69.5
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 1.1e-69 267.3 188 71.3
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 1.9e-69 266.5 205 67.3
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 3.2e-69 265.8 180 71.1
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 5.4e-69 265.0 225 61.8
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 7.0e-69 264.6 194 67.5
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 9.2e-69 264.2 178 72.5
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 1.6e-68 263.5 194 67.0
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 2.0e-68 263.1 193 66.3
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 6.0e-68 261.5 219 61.2
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 1.0e-67 260.8 197 64.0
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 1.3e-67 260.4 194 65.5
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 6.6e-67 258.1 194 64.4
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 8.6e-67 257.7 206 64.6
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 1.9e-66 256.5 195 65.1
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 2.5e-66 256.1 189 67.7
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 6.2e-65 251.5 146 81.5
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 4.0e-64 248.8 302 50.0
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 3.4e-63 245.7 229 57.6
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 6.4e-62 241.5 208 58.7
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 8.3e-62 241.1 265 50.6
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.4e-61 240.4 194 62.4
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 1.4e-61 240.4 201 60.2
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 2.1e-60 236.5 193 61.1
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 6.6e-59 231.5 189 60.3
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 8.6e-59 231.1 189 62.4
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.1e-56 224.2 171 65.5
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 2.0e-55 219.9 189 58.2
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 7.5e-55 218.0 140 71.4
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 2.7e-52 209.5 193 53.9
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 5.1e-51 205.3 153 66.0
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 5.1e-51 205.3 185 53.5
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 6.6e-51 204.9 193 52.3
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 2.4e-48 196.4 150 64.7
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 1.7e-46 190.3 156 59.0
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 7.8e-44 181.4 152 58.6
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 4.4e-39 165.6 98 78.6
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 5.4e-37 158.7 80 95.0
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.6e-36 155.6 98 70.4
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 1.9e-34 150.2 177 49.2
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 5.6e-34 148.7 177 49.7
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 1.8e-32 143.7 146 47.9
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 2.4e-32 143.3 177 46.9
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.9e-30 136.3 146 53.4
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 7.9e-28 128.3 79 72.2
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 5.1e-27 125.6 79 70.9
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 8.7e-27 124.8 78 70.5
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 4.5e-23 112.5 102 62.7
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 9.9e-23 111.3 230 34.3
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 1.6e-20 104.0 61 77.0
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 4.6e-20 102.4 61 75.4
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 7.4e-18 95.1 77 61.0
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 5.8e-15 85.5 56 69.6
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.3e-11 74.3 39 89.7
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 2.2e-09 67.0 40 72.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 1.8e-08 63.9 40 67.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.8e-08 63.9 39 71.8
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 2.4e-08 63.5 35 85.7
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 1.7e-06 57.4 87 43.7
BcaC05g29972 Brassica carinata HOM05D000160 ORTHO05D000914 6.5e-06 55.5 28 89.3


User provided reference genes

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