Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 4.9e-82 309.7 186 100.0
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 1.9e-73 281.2 190 93.7
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 4.1e-68 263.5 194 89.7
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 4.6e-64 250.0 190 85.8
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 6.7e-63 246.1 186 83.9
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 8.5e-50 202.6 188 73.9
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 8.0e-48 196.1 186 62.9
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 1.4e-47 195.3 186 62.9
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 2.2e-45 188.0 186 60.2
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 2.2e-45 188.0 186 60.2
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 1.6e-40 171.8 186 52.7
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 1.9e-25 121.7 186 43.0
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.0e-23 115.9 183 41.0
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 1.0e-23 115.9 183 41.0
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 1.4e-23 115.5 183 39.9
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 2.0e-22 111.7 185 49.2
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 7.5e-22 109.8 185 38.4
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 7.5e-22 109.8 133 50.4
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.3e-21 109.0 186 52.2
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 1.3e-21 109.0 151 43.7
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 1.7e-21 108.6 188 50.5
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 2.9e-21 107.8 186 52.2
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.4e-21 106.7 173 49.7
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.4e-21 106.7 173 49.7
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 8.3e-21 106.3 173 49.7
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 1.4e-20 105.5 147 43.5
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 1.8e-20 105.1 115 47.0
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 1.8e-20 105.1 187 51.3
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.4e-20 104.8 173 49.1
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.4e-20 104.8 173 38.2
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 3.2e-20 104.4 121 44.6
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 4.1e-20 104.0 186 37.6
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 7.0e-20 103.2 188 50.0
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 9.2e-20 102.8 120 65.8
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 1.2e-19 102.4 132 43.2
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 2.7e-19 101.3 134 61.2
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 3.5e-19 100.9 79 63.3
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 4.6e-19 100.5 155 39.4
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 7.8e-19 99.8 147 40.1
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 7.8e-19 99.8 115 67.8
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 7.8e-19 99.8 123 45.5
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.7e-18 98.6 98 50.0
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 2.3e-18 98.2 153 41.8
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 3.0e-18 97.8 75 61.3
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 3.0e-18 97.8 186 37.1
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 6.6e-18 96.7 154 40.3
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 8.6e-18 96.3 184 34.2
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 1.5e-17 95.5 105 43.8
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 1.5e-17 95.5 76 59.2
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 1.9e-17 95.1 120 43.3
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 2.5e-17 94.7 104 44.2
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 4.3e-17 94.0 188 35.6
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 4.3e-17 94.0 150 39.3
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 7.3e-17 93.2 112 42.9
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.6e-16 92.0 156 40.4
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.6e-16 92.0 156 40.4
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 1.6e-16 92.0 116 45.7
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 3.6e-16 90.9 150 37.3
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 8.0e-16 89.7 156 39.1
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 8.0e-16 89.7 103 41.7
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 8.0e-16 89.7 68 60.3
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 1.4e-15 89.0 84 48.8
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 1.8e-15 88.6 114 42.1
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.8e-15 88.6 63 63.5
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 3.1e-15 87.8 91 47.3
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 4.0e-15 87.4 185 34.1
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 4.0e-15 87.4 88 47.7
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 2.0e-14 85.1 153 37.9
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 4.4e-14 84.0 111 41.4
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 5.8e-14 83.6 150 35.3
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 7.5e-14 83.2 98 48.0
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 7.5e-14 83.2 119 37.8
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 7.5e-14 83.2 68 55.9
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 1.7e-13 82.0 119 37.0
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 1.7e-13 82.0 72 52.8
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 3.7e-13 80.9 99 41.4
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 3.7e-13 80.9 142 37.3
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 6.4e-13 80.1 187 31.0
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 6.4e-13 80.1 79 51.9
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 1.4e-12 79.0 144 36.1
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 2.4e-12 78.2 151 36.4
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 7.0e-12 76.6 151 34.4
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 9.2e-12 76.3 76 82.9
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 1.6e-11 75.5 63 54.0
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 1.7e-10 72.0 81 46.9
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 6.6e-10 70.1 186 26.9
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 1.1e-09 69.3 147 32.7
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 2.5e-09 68.2 105 35.2
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 1.2e-08 65.9 76 46.1
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 6.2e-08 63.5 66 43.9
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 8.9e-07 59.7 44 68.2


User provided reference genes

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